Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6498 187 3e-42 seq6529 129 8e-25 >seq6498 Length=96284 Score = 187 bits (206), Expect = 3e-42 Identities = 620/951 (65%), Gaps = 20/951 (2%) Strand=Plus/Plus Query 71698 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCA 71757 |||| ||||||| || || || || ||||||| || | || || | ||||| ||| Sbjct 27672 GCAAGCGATGCCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGTACTCGATAATCTCA 27731 Query 71758 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 71817 |||||||| || || || ||||| | || | ||| |||||||| ||| || Sbjct 27732 GTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTTTGGTTACTCTTGCGGTTGCAG 27791 Query 71818 GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 71877 |||||| || | || || || ||||||| || |||||| ||| | ||| || | | Sbjct 27792 TGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATGGCATAC 27851 Query 71878 CAGACGACTC-GAGCCTTTATTATATTCTTGTATC-TCTTTTCTCTTTCGTA-TTGT-GT 71933 || | | || ||||||| || || | | || || || | |||| ||| || Sbjct 27852 CACA-GCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCCTGCT-CGTACTTGACGT 27909 Query 71934 ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACA 71993 | | | | ||||| || || || | || | || ||||| || || || || || Sbjct 27910 AAAGAGCC--TCGAATTCCTCACCGTAGCAATCAGCCAAGCCAGGGCACTCGTTGGGGCA 27967 Query 71994 CATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 72053 ||| | | ||| || || | | | || || ||||| || | ||||| ||||| || Sbjct 27968 CATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAGTCAGGGATCCACAG 28027 Query 72054 AGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 72113 || | || | ||| | | | | |||||| || || ||||| ||| || || Sbjct 28028 GGCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGAAGGTCAAG 28087 Query 72114 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTT 72173 |||| | | | ||||| |||||||| |||| ||| ||||| | | | || || || || Sbjct 28088 GAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTT 28147 Query 72174 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 72233 ||| || |||||||| | ||| | || ||||| || | || | || ||| |||| ||| Sbjct 28148 GTTGCCACCCTGATCGACGTAACGGGCAGTGTTGTTGAACACACGCAGCATAGGAACAAT 28207 Query 72234 ACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAA- 72292 ||| || || | ||| || || |||| || ||| ||| | ||||| ||| | || Sbjct 28208 ACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGAAC 28267 Query 72293 -TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCA 72351 |||| |||| || || || ||||| || ||||| | || || || | |||||| Sbjct 28268 GTTGA--GACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCA 28325 Query 72352 TAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 72411 ||||| || || ||||| || ||| |||||| | | || ||| ||| | || | Sbjct 28326 TAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGC 28385 Query 72412 CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGT 72471 || || || || || || | ||||||||| ||||| || || | || |||| Sbjct 28386 TGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATG 28445 Query 72472 AGATTGTACGTCTCAATAGCTGATTCTA---TATC-CCATTGATGTATTCCTACCGCGAC 72527 || ||||| || || | | | || | |||| || | || || || || || Sbjct 28446 AGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAG----ATACCGACAGCAAC 28501 Query 72528 ACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGA 72587 |||||| | ||| |||||||| | || || |||||| || | || | | ||| || Sbjct 28502 ACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGA 28561 Query 72588 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 72638 | |||||| || ||||| ||||| || | ||| ||||| || || || Sbjct 28562 TCTTTCCAGGGTCTTAAATCCAAAGTACTGGTAGTTGAAGTCACGGTCATA 28612 >seq6529 Length=132804 Score = 129 bits (142), Expect = 8e-25 Identities = 371/566 (66%), Gaps = 10/566 (2%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||| ||||||||||| | | || | |||||||| || || || |||||||| | || Sbjct 77319 GTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAGACCGGGCATCATACC 77378 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 |||||| ||||| || ||||| ||||| | ||||| |||||||| || || || || Sbjct 77379 ACGCTTGCGCAGCCAGAAGATAGAGGCAAAAGCACCAGAGAAGAAGATACCCTCAACAGC 77438 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATAA-CCGGCAC--TGTCATGTATCCACTTTTGAGC 42255 |||||||||| || | || || || || | | ||||| |||||||| | || Sbjct 77439 GGCAAAGGCAACCAGACGCTGGGCAAAAGTCGACTCCTTGTCAGCAATCCACTTCAGGGC 77498 Query 42256 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 42315 ||| |||||||| | || || || || || ||||| || ||||| || | Sbjct 77499 CCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGAGGTATGTGCG 77558 Query 42316 ttCATTACTATCTTTAACATATGTATCGATCA--AAAGACTATACATTTCTGAATGAATG 42373 | | | || || | || || || |||| ||||| || | || || || ||| Sbjct 77559 CTGAGCAGGCTCCTTGATGTAGGTGTCAATCAGCAAAGA--GTAGGTCTCCGAGTGGATG 77616 Query 42374 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTA 42433 || || || ||||| || |||||||| || | ||| |||| | ||| || || | | Sbjct 77617 TTCTCCATCATGATCTGGAAACCGTAGAAGCAACGGGCTTCGGGGATCTGGACCTCAGCA 77676 Query 42434 CAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 42493 | || || || | || || ||||| || || |||||| || || || || || | Sbjct 77677 GAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAAGCGGCGAAGAAGGCAAGA 77736 Query 42494 ACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAATCATTGATATCT 42550 || || || || | | || ||| ||| | || ||||| || | | ||| Sbjct 77737 ACGTGAGAGATGAAGAACTGCTCATCCTTTGTCATGCGGTTGTTCCAGTCGTGAAGATCC 77796 Query 42551 TTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTC 42610 || || | || | || || | ||||| || || || || ||||| || ||||| | | Sbjct 77797 TTGGAAAGGTCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGC 77856 Query 42611 CAGATATCATGATATTGAATTGGGAA 42636 ||||| || || || | || ||||| Sbjct 77857 CAGATCTCGTGGTACTTGATAGGGAA 77882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671084317591920