Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6498 116 5e-21 >seq6498 Length=96284 Score = 116 bits (128), Expect = 5e-21 Identities = 320/485 (66%), Gaps = 4/485 (1%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| | ||| |||| || |||||||| || Sbjct 28159 CAGGGTGGCAACAAGCGTCCTGGTGCTTTTGCCATTTACCTGGAGCCGTGGCACGCTGAT 28100 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || | || || ||| || || ||| || || | || Sbjct 28099 GTGTTTGAGTTCCTTGACCTTCGGAAGAACCACGGTAAGGAGGAGATTCGCGCTCGCGAT 28040 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 ||||| ||| || ||| | || || |||||||||||||| || | | ||| | Sbjct 28039 TTGTTCCTTGCCCTGTGGATCCCTGACTTGTTCATGAAGCGTGTTGAGAAGAACGGCGAA 27980 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| ||| ||||||||| || || || || || | ||||||| || || || || Sbjct 27979 TGGACCCTCATGTGCCCCAACGAGTGCCCTGGCTTGGCTGATTGCTACGGTGAGGAATTC 27920 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 ||||| ||| |||||||| || || || ||| || | || | || | Sbjct 27919 GAGGCTCTTTACGTCAAGTACGAGCAGGAAGGACGTGGCCGTCTTACCA-TCAAGGCTC- 27862 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| |||||| | ||||| || |||||| |||||||| | || | ||| | | Sbjct 27861 AGAAGCTGTGGTATGCCATTCTGGAAGCTCAGACGGAGACTGGTAACCCTTTCATGTTGT 27802 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||||| | || ||||| || |||||| || |||| || || | |||| Sbjct 27801 ACAAGGATCACTGCAACCGCAAGAGTAACCAAAAGAACCTGGGAACTATTCGCAGTTCCA 27742 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGG 97353 | || ||||| || ||| | |||||| | |||| || ||| || || ||| ||| Sbjct 27741 ACCTTTGCACTGAGATTATCGAGTACTGCGCTCCTGATGAGGTCGCTGTGTGCAACTTGG 27682 Query 97354 CATCG 97358 ||||| Sbjct 27681 CATCG 27677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740998599883920