Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq6394 95.1 1e-14 >seq6394 Length=53086 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| |||| || || ||||||||||||||||||| | | Sbjct 6365 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTCCTCCAGCTGCTTACCAGCAAA 6424 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| ||| || | | ||||||||| || || ||||| Sbjct 6425 GATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTT 6484 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | |||||||| | |||||| ||| | || ||||| || ||||| ||||| ||||| Sbjct 6485 GTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCAC 6544 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 6545 GAAGATCTGCAT 6556 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || ||||||||||| | || || || | ||||| ||||| Sbjct 6810 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGA-AAGGGTGCGGCCATCCTCGAGCTG 6868 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || |||| | |||||||| ||| || | || ||||||||| || || Sbjct 6869 CTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTT 6928 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | |||||||||| ||||| ||||| || ||||| || ||||| Sbjct 6929 GGACTTGACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTAATGGTCTTTCCGGT 6988 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||||||||| Sbjct 6989 CAGGGTCTTGACGAAAATCTGCAT 7012 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || | || || || ||||||||||||||||||| | Sbjct 7049 CTCCTTCTGGATGTTGTAGTCGGA-AAGGGTACGGCCGTCCTCCAGCTGCTTACCCGCAA 7107 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--T 48651 | || | ||||||||| ||| || | || ||||| ||| ||| ||| ||||| | Sbjct 7108 AGATAAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGAATCTTCGACTTGACGT 7167 Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || ||||| || | ||||| ||| | || ||||| || || || ||||| || Sbjct 7168 TGTCG--ATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGTCTTGCCAGTCAGAGTCTT 7225 Query 48712 CACAAAAATCTGCAT 48726 ||||| |||||||| Sbjct 7226 GACAAAGATCTGCAT 7240 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| ||||||||||| || | | || | ||||| |||||| Sbjct 6582 TGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGAGTACGGCCATCCTCAAGCTGC 6641 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 ||||| || |||| | ||||| || ||| || | || ||||||||| ||| ||| Sbjct 6642 TTACCAGCGAAAATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTC 6701 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | |||||||| | ||||| ||| | || || || || ||||| Sbjct 6702 GACTTAACATTGTCGATGGTATCCGACGACTCGACCTCAAGGGTAATTGTCTTTCCGGTC 6761 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||||||||| Sbjct 6762 AGGGTCTTGACGAAAATCTGCAT 6784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421217613378542