Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6346 172 9e-39 seq6489 96.9 5e-16 >seq6346 Length=42708 Score = 172 bits (190), Expect = 9e-39 Identities = 201/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| |||| ||| |||||| || ||||| || || ||||| ||||| |||| Sbjct 717 CGCTAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACTAAGCCCGCTA 659 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| |||||||||||||| ||||||||| | || | || |||| || |||| Sbjct 658 TTCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCCGCCATGATCTACGAGGAGA 599 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||||| |||| | |||| |||||| || || || | ||| ||| || ||| || | Sbjct 598 CTCGTGGTGTTCTCAAGACCTTCCTTGAGGGTGTCATTCGTGACGCTGTCACCTACACTG 539 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||||| | || | ||||| || | || | |||| Sbjct 538 AGCACGCCAAGCGCAAGACCGTCACCTCTCTCGACGTTGTCTACGCTCTCAAGAGACAAG 479 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || ||||| || ||||| Sbjct 478 GCCGCACCCTGTACGGTTTCGGTGGTTAA 450 >seq6489 Length=90348 Score = 96.9 bits (106), Expect = 5e-16 Identities = 84/102 (82%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || || |||||||| || | Sbjct 84528 CGCCAAGCGTCACCGCAAGAT-TCTTCGCGACAACATTCAGGGTATTACCAAGCCCGCCA 84586 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 | || ||||| |||||||||||||| ||||||||| | |||| Sbjct 84587 TTCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 84628 Score = 89.7 bits (98), Expect = 8e-14 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| || | |||| | |||| |||||| || || || | ||| | Sbjct 84698 TGATCTACGAAGAGACCCGCGGTGTTCTCAAGACCTTCCTTGAGGGTGTCATTCGTGACG 84757 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || ||| || |||||||| || || |||||||||||||| | || | ||||| | Sbjct 84758 CTGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACCTCGCTTGACGTTGTCTACG 84817 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || ||||||| |||| ||||| || ||||| Sbjct 84818 CTCTCAAGCGCCAGGGCCGTACTCTTTACGGTTTCGGTGGTTAA 84861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069218603606