Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6498 199 5e-46 >seq6498 Length=96284 Score = 199 bits (220), Expect = 5e-46 Identities = 640/979 (65%), Gaps = 22/979 (2%) Strand=Plus/Plus Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 62950 |||| ||||||| || || || || ||||||| || | | ||| || | || ||||| Sbjct 27672 GCAAGCGATGCCAAGTTGCACACAGCGACCTCATCAGGAGC-GCAGTACTCGATAATCTC 27730 Query 62951 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63010 ||||||||| || || |||||||| | || | ||| |||||||| ||| || Sbjct 27731 AGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTTTGGTTACTCTTGCGGTTGCA 27790 Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070 |||||| || | ||||| || ||||||| || |||||| ||| | ||| || | Sbjct 27791 GTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATGGCATA 27850 Query 63071 CCAGACGACTC-GAGCCTTTATTATA-GATTTGTATCTCCTTTCTCTTTCGTA--TAGTG 63126 ||| | | || ||||||| || || || | ||||| || | |||| | | Sbjct 27851 CCACA-GCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCCTGCT-CGTACTTGACG 27908 Query 63127 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 63186 || | | | ||||| || || || | || |||| ||||| || || | || | Sbjct 27909 TAAAGAGCC--TCGAATTCCTCACCGTAGCAATCAGCCAAGCCAGGGCACTCGTTGGGGC 27966 Query 63187 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63246 |||| | | ||| || |||| | || || || ||||| || | ||||| ||||| | Sbjct 27967 ACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAGTCAGGGATCCACA 28026 Query 63247 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63306 | || | || | ||| | | | | ||||| || || ||||| ||| || | Sbjct 28027 GGGCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGAAGGTCAA 28086 Query 63307 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63366 ||||| | | | ||||| |||||||| |||| ||| ||||| | | | ||||| || | Sbjct 28087 GGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCT 28146 Query 63367 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63426 |||| || |||||||| | ||| | || ||||| || | || | || ||| |||| || Sbjct 28147 TGTTGCCACCCTGATCGACGTAACGGGCAGTGTTGTTGAACACACGCAGCATAGGAACAA 28206 Query 63427 TACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAA 63486 ||||||| || |||| || || |||| || ||| ||| | ||||| ||| || Sbjct 28207 TACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGAA 28266 Query 63487 --TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 |||| |||| || || || ||||| || ||||| | || || || | || || Sbjct 28267 CGTTGA--GACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATC 28324 Query 63545 ATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63604 ||||||||| || || || || || |||||| | | || ||| ||| | || | Sbjct 28325 ATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGG 28384 Query 63605 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63664 || || || || || || | ||||||||| ||||| || || | || || | Sbjct 28385 CTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACAT 28444 Query 63665 TAGATTGTACGTCTCAATAGCTGAGTCTA---TATC-CCATTGATGAATTCCTACTGCGA 63720 || ||||| || || | | | || | |||| || | || || || || | Sbjct 28445 GAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAG----ATACCGACAGCAA 28500 Query 63721 CACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGG 63780 ||||||| | |||||||||||| | || || |||||| | | || | | ||| | Sbjct 28501 CACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAG 28560 Query 63781 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 63840 || |||||| || ||||| ||||| || | ||| ||||| || || || | || Sbjct 28561 ATCTTTCCAGGGTCTTAAATCCAAAGTACTGGTAGTTGAAGTCACGGTCATAGACGATGG 28620 Query 63841 CCGAGTTGAGTTTATCCTT 63859 |||||| || | ||||| Sbjct 28621 CCGAGTCCAGCTCTTCCTT 28639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622896258492720