Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6498 403 5e-107 seq6529 86.0 2e-11 >seq6498 Length=96284 Score = 403 bits (446), Expect = 5e-107 Identities = 1180/1793 (66%), Gaps = 46/1793 (3%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTA-TCAATGGTGATATTGTTGA 363449 || |||| |||||| |||| | ||| ||||| |||| | |||| | ||||| || Sbjct 28585 TTTGGATTTAAGACCCTGGAAAGATCTTACCT-TCTCAAGCTTGATGGCAAGATTGTCGA 28527 Query 363450 ACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGC 363509 || || ||||| ||| | |||||||||||| | |||||| | ||||||| Sbjct 28526 GCGTCCTCAGCACATGATTATGCGTGTTGCTGTCGGTATCTGGGGTGATAATGTTGAGCG 28467 Query 363510 CGCGATTGAAACATATAAGCTTCTAA-GTGCTCGTGTATTCACGCACGCCACGCCAACAA 363568 | | ||||| || || || | | || || | ||||| |||||| | || || Sbjct 28466 TGTTCTGGAAACTTACAACCTCATGTCGAGCAAGT-TCTTCACTCACGCCTCTCCTACCC 28408 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | ||| || || || | | | || ||| | ||||| ||||| | || | ||||||| Sbjct 28407 TCTTCAACGCCGGTACCCCTCAGCCTCAGCTTTCTTCCTGCTTCTTGGTAGACATGAAGG 28348 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | || ||||| ||||||| ||| || || |||| |||||| | || ||||||| | Sbjct 28347 AGGACAGTATCGAAGGTATCTATGATACCCTCAAGACCTGTGCTATGATCTCCAAGATGG 28288 Query 363689 CAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAGTT---ACATTCG 363743 | || || || ||| | | || || || | | ||||| || | ||| ||||| Sbjct 28287 CGGGTGGTATCGGTCTCAACGTTC-ACCGTATCCGTGCTACTG----GTTCCTACATTGC 28233 Query 363744 CGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 |||||| || |||||| || | ||||| ||||| |||||||| |||| ||||| Sbjct 28232 CGGCACTAACGGTACCTCGAACGGTATTGTTCCTATGCTGCGTGTGTTCAACAACACTGC 28173 Query 363804 GAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCC 363863 | |||||||| |||||||| ||||| || || ||||| || || || ||||| Sbjct 28172 CCGTTACGTCGATCAGGGTGGCAACAAGCGTCCTGGTGCTTTTGCCATTTACCTGGAGCC 28113 Query 363864 TCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATT 363923 || || ||| | |||||||| ||||| || ||||| ||| || || ||||| | Sbjct 28112 GTGGCACGCTGATGTGTTTGAGTTCCTTGACCTTCGGAAGAACCACGGTAAGGAGGAGAT 28053 Query 363924 GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGA 363983 || || || ||| ||||| ||| || ||| | ||||| || |||||||| || || Sbjct 28052 TCGCGCTCGCGATTTGTTCCTTGCCCTGTGGATCCCTGACTTGTTCATGAAGCGTGTTGA 27993 Query 363984 GGCAGGTAAGA--ATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTA 364041 | | | | | | ||| | ||| | ||||| |||| || || || | | ||| Sbjct 27992 G--AAGAACGGCGAATGGACCCTCATGTGCCCCAACGAGTGCCCTGGCTTGGCTGATTGC 27935 Query 364042 TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAG 364101 | ||||| || | | ||||| |||| ||||| || ||| ||| | ||| Sbjct 27934 TACGGTGAGGAATTCGAGGCTCTTTACGTCAAGTACGAGCAGGAAGGACGTGGCCGTCTT 27875 Query 364102 ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACA 364161 || || || |||||||| |||| |||||| |||| | |||| ||||| || | | Sbjct 27874 ACCATCAAGGCTCAGAAGCTGTGGTATGCCATTCTGGAAGCTCAGACGGAGACTGGTA-A 27816 Query 364162 CCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTAC 364220 |||| | ||||||||||| ||| |||||||||||| ||||| || |||| || || Sbjct 27815 CCCTTTCATGTTGTACAAGGATCACTGCAACCGCAAGAGTAACCAAAAGAACCTGGGAAC 27756 Query 364221 AATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTG 364279 |||| |||| |||||| || || |||||||| || ||| |||||| || ||| | Sbjct 27755 TATTC-GCAGTTCCAACCTTTGCACTGAGATTATCGAGTACTGCGCTCCTGATGAGGTCG 27697 Query 364280 CCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT----------AAAAGATGGT 364329 | || || ||| | || ||| | || || || || ||||| || | || | Sbjct 27696 CTGTGTGCAACTTGGCATCGCTTGCTCTCCCTGCCTTTGTTGACTACACCAACAACTGCT 27637 Query 364330 ACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAG 364389 || ||| |||| | || | || || ||| | || | |||| | || Sbjct 27636 AC----GACTTCCAGAAGCTGCACGATGTCACCAAGGTTGTTGTCCGCAACTTGAACCGT 27581 Query 364390 GTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGC 364449 | || || ||| | || || || || ||| | ||| |||||||| || Sbjct 27580 ATCATTGATGTGAACCACTACCCTGTTGTCGAGGCCCGGAACAGTAACATGCGTCACCGT 27521 Query 364450 CCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTT 364509 || |||||| ||||||| ||||| || || || | || || || ||| | ||| Sbjct 27520 CCCATTGGTGTTGGTGTTCAGGGTCTGGCCGATGCGTTCCTGGCCCTTCGTATGCCTTTT 27461 Query 364510 GATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCA 364569 || || | || |||||| || || ||| |||||||||| || || || || || Sbjct 27460 GAGTCTGCCGAGGCTCGTCAGCTCAACAAGCAGATCTTTGAGACCATTTACCACGCTGCC 27401 Query 364570 ATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCC 364629 || |||||||| ||| | || | || | ||||| || || ||||| || Sbjct 27400 CTGGAGGCTTCGTGCGATATCGCTGCTGTTGAAGGTACTTACTCGACGTACGAGGGATCT 27341 Query 364630 CCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGG 364689 ||| |||| ||||| | | ||||| || | ||| ||||||| || || || ||| Sbjct 27340 CCTGTTTCTCAGGGTATCCTTCAGTTCGACATGTGGGATGTCACCCCCAGTGACCTGTGG 27281 Query 364690 AACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTAC 364748 | ||| | | | | | | | | ||| || | ||| ||||||||| || || Sbjct 27280 GATTGGAACTCTTTGAAGGAGC-AGATCAAGCAGAACGGTGTTCGCAACTCGCTGCTTCT 27222 Query 364749 AGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACC 364808 |||||||||||||| || || ||| | ||||| || || ||||||||||||||||| || Sbjct 27221 GGCGCCCATGCCCACTGCGTCAACTTCTCAGATTCTGGGTAACAACGAGTGCTTCGAGCC 27162 Query 364809 GTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAA--- 364865 | || || |||| ||||| || | | || || || | ||| || || Sbjct 27161 TTACACTTCGAACATTTACCAGCGCCGTGTGTTGGCTGGTGAGTTCCAGGTTGTCAACCC 27102 Query 364866 TAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTA 364925 | || || || |||||| |||| || |||||| |||| |||||||||| Sbjct 27101 TTGGTTGCT--TC-GCGATCTTGTTGACCTTGGTCTGTGGTCGGACAACATGAAGAACCG 27045 Query 364926 TATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCC 364985 ||||| | | || |||||| | |||||||| || | |||| | || | ||| | Sbjct 27044 CATCATTTCGGACAACGGTTCTATCCAGAACATCCCCAGCATTCCGGCGGACATCAAGTC 26985 Query 364986 TATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCG 365045 | ||||||| || || ||||| ||||| ||| ||| | || | ||||| ||||| || Sbjct 26984 TCTTTACAAGACTGTTTGGGAGATTTCTCAGCGTACTGTTGTTCAGATGGCTGCCGACCG 26925 Query 365046 CGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGC 365105 ||||| ||||| |||| |||||||| ||| | ||||| | |||||| | Sbjct 26924 TGGTGCCTTTATTGATCAGTCTCAGTCGTTGAACATTCACATGAAGGACCCAACCATGGG 26865 Query 365106 CAAGCTTACATCCATGCATTTCTACGGG-TGGAAATCCGGTCTTAAGACAGGT 365157 |||| |||| |||||| || | |||| ||||| ||||| ||||| ||| Sbjct 26864 CAAGATTACCAGCATGCACTT-TGCGGGTTGGAAGCTTGGTCTCAAGACGGGT 26813 >seq6529 Length=132804 Score = 86.0 bits (94), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 22441 AAGGCAGATTGGGCGCTGAAATGGATGA---ACAATGAACGTTCATTCGCGGAACGTCTT 22497 ||||| || ||||| ||||| ||||| |||| || | || || | ||||| Sbjct 77510 AAGGCCGACTGGGCCCTGAAGTGGATTGCTGACAAGGAGTCGACTTTTGCCCAGCGTCTG 77451 Query 22498 ATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGG 22557 |||| ||||| | ||||| || || ||||| ||||| || ||| | ||||| ||| Sbjct 77450 GTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCTATCTTCTGG 77391 Query 22558 CTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGAT 22617 || || |||| || ||||| ||||| || || || || ||| | || || ||| Sbjct 77390 CTGCGCAAGCGTGGTATGATGCCCGGTCTGACTTTCTCCAACGAGCTTATCTCTCGTGAT 77331 Query 22618 GAGGGTCTTCATACCGATTTTGCGTG 22643 ||||||||||| || || ||||| || Sbjct 77330 GAGGGTCTTCACACGGACTTTGCCTG 77305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303244353715844