Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6394 141 9e-29 seq6498 131 2e-25 seq6529 109 5e-19 seq6283 102 8e-17 seq6490 100 3e-16 >seq6394 Length=53086 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | || | ||| |||||||| || |||||||| || Sbjct 6329 GCCACCACGAAGACGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGA 6388 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || |||||| |||||||| || || |||| | |||||||||||||||||| Sbjct 6389 CAGGGTACGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGAGG 6448 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | || | ||||| | ||||||| Sbjct 6449 GATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCAATGGTATCAGAAGACTCGAC 6508 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || ||||| ||||| || ||||| |||||||| Sbjct 6509 CTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 6556 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||||||| | |||||| ||||| ||||||||||| Sbjct 6816 GTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 6875 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || | |||||||||||||| ||||| || || ||||| ||| || |||| Sbjct 6876 GCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 6935 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||||||| |||||| | |||| ||||| ||| || ||||| || || Sbjct 6936 ACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTAATGGTCTTTCCGGTCAGGGTC 6995 Query 131218 TTTACGAAAATCTGCAT 131234 || |||||||||||||| Sbjct 6996 TTGACGAAAATCTGCAT 7012 Score = 109 bits (120), Expect = 5e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||||||| | |||||| ||||| ||||||||||| Sbjct 7272 GTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCA 7331 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || | |||||||||||||| ||||| || || ||||| ||| || |||| Sbjct 7332 GCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 7391 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGT 131210 | | || | ||||||| |||||| | |||| ||| | ||| || ||||| Sbjct 7392 ACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 7444 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| |||||||| ||||||||||| || Sbjct 6558 CCACCACGGAGACGGAGAACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAG 6617 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || ||| | || | ||||| |||||||| || Sbjct 6618 AGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCCGGGGGA 6677 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||| | | || | ||||| | ||||||| Sbjct 6678 ATACCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCCGACGACTCGACC 6737 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || ||||| || || || |||||||||||||| Sbjct 6738 TCAAGGGTAATTGTCTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 6784 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||| ||| | ||| || |||||| |||||||| || Sbjct 7044 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCCAGCTGCTTACCC 7103 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| | ||||||||||||||||||||| || || || || || ||| |||| Sbjct 7104 GCAAAGATAAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGAATCTTCGACTTG 7163 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || || | |||||| | || | || | ||| || || || ||||| Sbjct 7164 ACGTTGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGTCTTGCCAGTCAGAGTC 7223 Query 131218 TTTACGAAAATCTGCAT 131234 || || || |||||||| Sbjct 7224 TTGACAAAGATCTGCAT 7240 >seq6498 Length=96284 Score = 131 bits (144), Expect = 2e-25 Identities = 828/1314 (63%), Gaps = 41/1314 (3%) Strand=Plus/Plus Query 144860 TGATCAATGAAAGCGTTGCGGTCGGCGGCCATCTCAATCA---TACGTTTGCATTTCATT 144916 |||||||| || || |||||||| ||||||| || | |||| | | || Sbjct 26907 TGATCAATAAAGGCACCACGGTCGGCAGCCATCTGAACAACAGTACGCTGAGAAATC--- 26963 Query 144917 TCCCAAGCGGTCTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATC 144976 |||||| | |||||||| | | || |||| ||||||||| | || ||| || Sbjct 26964 TCCCAAACAGTCTTGTAAAGAGACTTGATGTCCGCCGGAATGCTGGGGATGTTCTGGATA 27023 Query 144977 GACCCCTTGTGCGCAAATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATC 145036 || || |||| || || ||| |||| ||| | | || |||| || | | | Sbjct 27024 GAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTGTCCGACCACAGACC-AAGGTCAAC 27082 Query 145037 AAG-TCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAA 145095 ||| ||| || || | | ||||| ||||| ||||| || ||||||||||| ||| Sbjct 27083 AAGATCGCGAAGCAACCAAGGGTTGACAACCTGGAACTCACCAGCCAACACACGGCGCTG 27142 Query 145096 ATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGT 145155 || | ||| || ||| | || || || ||||||| || ||||| || |||| || | Sbjct 27143 GTAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGAGAAGTTGA 27202 Query 145156 TGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTC 145215 || ||||||||| ||||| | | || ||||| | |||| || |||||| | || Sbjct 27203 CGCAGTGGGCATGGGCGCCAGAAGCAGCGAGTTGCGAACACCGTTCTGCTTGATCTGCTC 27262 Query 145216 CTTTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAA 145275 ||| | | ||||||||| || | | || | || |||||||||||| |||| | Sbjct 27263 CTTCAAAGAGTTCCAATCCCACAGGTCACTGGGGGTGACATCCCACATGTCGAACTGAAG 27322 Query 145276 AATGCCCT-CGCTGGCGGGGCTGCCTTGAAAG--GAACTGTAACTGCCCCAAGTTTTGGC 145332 || |||| | || | | ||| | | | || |||| | || | || Sbjct 27323 GATACCCTGAGAAACAGGAGATCCCTCGTACGTCGA---GTAAGTACCTTCAACAGCAGC 27379 Query 145333 GAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAG 145392 || ||||| |||||||| || || ||||| ||||| || ||| ||||||| Sbjct 27380 GATATCGCACGAAGCCTCCAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAG 27439 Query 145393 CAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCC 145452 | | || || | ||| | ||||| || || | || |||||||| || || Sbjct 27440 CTGACGAGCCTCGGCAGACTCAAAAGGCATACGAAGGGCCAGGAACGCATCGGCCAGACC 27499 Query 145453 CTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGG 145512 ||| | || || || ||||| || || |||||| || ||| ||| | | ||| Sbjct 27500 CTGAACACCAACACCAATGGGACGGTGACGCATGTTACTGTTCCGGGCCTCGACAACAGG 27559 Query 145513 ATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCG 145572 || | || || || || |||||||| || || || ||||| || | | | Sbjct 27560 GTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGACAACAACCTTGGTGACATCGTG 27619 Query 145573 CAACTTTTCAAAGTC-AAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCG 145631 || ||| | ||||| | | | | || | | | ||| || | || || | || Sbjct 27620 CAGCTTCTGGAAGTCGTAGCAGTTGTTGGTGTA-GTCAACAAAGGCAGGGAGAGCAAGCG 27678 Query 145632 ACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACA 145691 | ||||| || || || || ||| || | ||| ||| | | ||||| | ||| | Sbjct 27679 ATGCCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGTACTCGATAATCTCAGTGCAAA 27738 Query 145692 AATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCT 145751 ||| || || |||||||| || | || ||||| || | |||||| |||| Sbjct 27739 GGTTGGAACTGCGAATAGTTCCCAGGTTCTTTTGGTTACTCTTGCGGTTGCAGTGATCCT 27798 Query 145752 TGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGT 145811 |||| | |||| | || ||||||||| ||| | |||| || | || | Sbjct 27799 TGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATGGCATACCACAGCT 27858 Query 145812 CCTGCGCACGCACCTGCTGCT-----GGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAG 145866 ||| || | || || | || || || || | ||||| || ||| || Sbjct 27859 TCTGAGC-----CTTGATGGTAAGACGGCCACGTCCTTCCTGCTCGTACTTGACGTAAAG 27913 Query 145867 CTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAG 145926 |||| || | |||||||||||| | || ||| || |||| |||||| ||||| || Sbjct 27914 AGCCTCGAATTCCTCACCGTAGCAATCAGCCAAGCCAGGGCACTCGTTGGGGCACATGAG 27973 Query 145927 CGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTA 145986 | |||| ||||||| | || |||| ||| ||||| || || | |||||| || Sbjct 27974 GGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAGTCAGGGATCCACAGGGCAAG 28033 Query 145987 CATCAAGTCGCGCGCTTTGCAA---TCCTCAGCACCCATGTTTCGCTTCAAA--TTAAGC 146041 | ||| ||||| || || | ||||| | || || ||| | | || | ||| Sbjct 28034 GAACAAATCGCGAGC---GCGAATCTCCTCCTTA-CCGTGGTTC-TTCCGAAGGTCAAGG 28088 Query 146042 ACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG--- 146097 | ||| | | | || ||||||||||| || | || | ||| | || || || Sbjct 28089 A-ACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTT 28147 Query 146098 TTTGCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 ||||||||||| || |||| ||| | ||||||| || || |||| ||| || Sbjct 28148 GTTGCCACCCTGATCGACGTAACGGGCAGTGTTGTTGAACACACGCAGCATAGG 28201 >seq6529 Length=132804 Score = 109 bits (120), Expect = 5e-19 Identities = 348/526 (66%), Gaps = 29/526 (6%) Strand=Plus/Minus Query 46083 TATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCA---ACAGCAGCAC 46139 ||| || ||| | ||| || |||||||||| |||||||||| ||| || | Sbjct 77529 TATTCCCTGCATTCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTGCTGACA--AGGAG 77472 Query 46140 CGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGG 46199 ||||||| ||| ||||| |||| |||||||| ||| ||||| |||| || ||||| Sbjct 77471 T-CGACTTTTGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGG 77413 Query 46200 CAGTTTTGCCGCCATCTTTTACAT-CAAAACCAAGGGCATCATGCCCGGCCTGACGTTTA 46258 ||||||| | ||||| | | | || | || || |||||||| ||||| || Sbjct 77412 TGCTTTTGCCTCTATCTTCTGGCTGCGCAAGCGTGGT-ATGATGCCCGGTCTGACTTTCT 77354 Query 46259 GCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATA 46318 ||||||||| || || || || ||||| || || ||||||||||| || || || | Sbjct 77353 CCAACGAGCTTATCTCTCGTGATGAGGGTCTTCACACGGACTTTGCCTG--CCTTCT-TT 77297 Query 46319 ACACTCGCGTGCACGACAAGCTTGCGCCCGA-CA--CCG----TGCTGAGCATGTTCAAG 46371 | ||| | || || || ||||| | || | | | | | ||| ||| Sbjct 77296 TCTCTCACCTGAACAAC-------CGCCCCAGCAAGCAGTTGATCCAGGACATCATCACT 77244 Query 46372 GAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGC 46431 || || || | ||||||||||||||| |||| | || || ||| || || || || Sbjct 77243 GATGCCGTCGTCATTGAGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCTCTTCTCGGT 77184 Query 46432 ATGAACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAG 46491 |||||||| | ||| ||| |||||||| || || ||||| || || || | Sbjct 77183 ATGAACGCTGACCTCATGAAGACCTATATCGAGTTCGTCGCCGACCGTCTTCTGGT--CG 77126 Query 46492 CT-TCACCAGC-CGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCT 46549 || || | | ||| | | || ||| || || || |||||| | ||||||| Sbjct 77125 CTCTCGGTAACGACAAGGTGTACAAGGCCTCCAACCCCTTCGACTTTATGGAGAACATCT 77066 Query 46550 CCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 |||| | || || || || || ||||| ||||| || || || || Sbjct 77065 CCCTTGGTGGAAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTA 77020 >seq6283 Length=33863 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || |||||||| || |||||||| || | Sbjct 31285 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 31226 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| |||| | ||||| |||||||| || Sbjct 31225 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 31166 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||||| Sbjct 31165 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 31106 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 || | ||| | ||| ||||| || || || || |||||| Sbjct 31105 TCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAAA 31067 >seq6490 Length=90610 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | |||||| ||||| ||||||||||| ||| | | Sbjct 85284 CCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAA 85225 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||||| || || || || ||||| ||| || ||||| | | Sbjct 85224 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 85165 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||||| || | ||| | || ||||| || || || || |||| Sbjct 85164 CGATCGTGTCCGAGGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGA 85105 Query 131225 AAATCTGCAT 131234 |||||||||| Sbjct 85104 AAATCTGCAT 85095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471974201153280