Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq6498 194 2e-44 >seq6498 Length=96284 Score = 194 bits (214), Expect = 2e-44 Identities = 639/979 (65%), Gaps = 22/979 (2%) Strand=Plus/Plus Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTC 62805 |||| ||||||| || || || || ||||||| || | | ||| || | || ||||| Sbjct 27672 GCAAGCGATGCCAAGTTGCACACAGCGACCTCATCAGGAGC-GCAGTACTCGATAATCTC 27730 Query 62806 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 62865 ||||||||| || || || ||||| | || | ||| |||||||| ||| || Sbjct 27731 AGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTTTGGTTACTCTTGCGGTTGCA 27790 Query 62866 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 62925 |||||| || | ||||| || ||||||| || |||||| ||| | ||| || | Sbjct 27791 GTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATGGCATA 27850 Query 62926 CCAGACGACTC-GAGCCTTTATTATA-GATTTGTATCTCTTTTCTCTTTCGTA--TAGTG 62981 ||| | | || ||||||| || || || | || || || | |||| | | Sbjct 27851 CCACA-GCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCCTGCT-CGTACTTGACG 27908 Query 62982 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGAC 63041 || | | | ||||| || || || | || ||| ||||| || || | || | Sbjct 27909 TAAAGAGCC--TCGAATTCCTCACCGTAGCAATCAGCCAAGCCAGGGCACTCGTTGGGGC 27966 Query 63042 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63101 |||| | | ||| || |||| | || || || ||||| || | ||||| ||||| | Sbjct 27967 ACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAGTCAGGGATCCACA 28026 Query 63102 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63161 | || | || | ||| | | | | ||||| || || ||||| ||| || | Sbjct 28027 GGGCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGAAGGTCAA 28086 Query 63162 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63221 ||||| | | | ||||| |||||||| |||| ||| ||||| | | | ||||| || | Sbjct 28087 GGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCT 28146 Query 63222 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63281 |||| || |||||||| | ||| | || ||||| || | || | || ||| |||| || Sbjct 28147 TGTTGCCACCCTGATCGACGTAACGGGCAGTGTTGTTGAACACACGCAGCATAGGAACAA 28206 Query 63282 TACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAA 63341 |||| || || ||||| || || || | || ||| ||| | ||||| ||| || Sbjct 28207 TACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGAA 28266 Query 63342 --TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399 |||| |||| || || || ||||| || ||||| | || || || | ||||| Sbjct 28267 CGTTGA--GACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATC 28324 Query 63400 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63459 |||||| || || ||||| || ||| |||||| | | || ||| ||| | || | Sbjct 28325 ATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGG 28384 Query 63460 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAG 63519 || || || || || || | ||||||||| |||||||| || | || || | Sbjct 28385 CTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACAT 28444 Query 63520 TAGATTGTACGTCTCAATAGCTGAGTCTA---TATC-CCATTGATGAATTCCTACTGCGA 63575 || ||||| || || | | | || | |||| || | || || || || | Sbjct 28445 GAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAG----ATACCGACAGCAA 28500 Query 63576 CACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGG 63635 ||||||| | |||||||||||| | || || |||||| | | || | | ||| | Sbjct 28501 CACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAG 28560 Query 63636 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAA 63695 || |||||| || ||||| ||||| || | ||| ||||| || || || | || Sbjct 28561 ATCTTTCCAGGGTCTTAAATCCAAAGTACTGGTAGTTGAAGTCACGGTCATAGACGATGG 28620 Query 63696 CCGAGTTGAGTTTATCCTT 63714 |||||| || | ||||| Sbjct 28621 CCGAGTCCAGCTCTTCCTT 28639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633580184743200