Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6394 122 7e-23 seq6490 111 1e-19 seq6283 98.7 8e-16 >seq6394 Length=53086 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || | || || || || || || || Sbjct 7012 ATGCAGATTTTCGTCAAGACCCTGACCGGAAAGACCATTACCCTCGAGGTTGAGTCCTCC 6953 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || || || |||||||||||||| || || || || Sbjct 6952 GATACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 6893 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | |||||| ||||||| | |||||||||||| Sbjct 6892 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGATTACAAC 6833 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || ||||| Sbjct 6832 ATCCAGAAGGAGTCCAC 6816 Score = 114 bits (126), Expect = 1e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || || || || || |||||||| | ||| || |||| Sbjct 7444 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGATACCATTGACAATGTCAAGTCC 7385 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| || || || || || || || || || || ||||| Sbjct 7384 AAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCTGATTTTCGCTGGCAAG 7325 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| |||||| |||||||||||||||| || || || ||||| Sbjct 7324 CAGCTTGAGGATGGTCGCACCCTCTCCGATTACAACATCCAGAAGGAGTCCAC 7272 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || |||||||||| || || || | Sbjct 7240 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCT 7181 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| || ||||||||||| || || || || Sbjct 7180 GACACCATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCGGACCAG 7121 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| || || ||| | ||||| ||| ||| | ||||| |||||| Sbjct 7120 CAGCGTCTTATCTTTGCGGGTAAGCAGCTGGAGGACGGCCGTACCCTTTCCGACTACAAC 7061 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 7060 ATCCAGAAGGAGTCTAC 7044 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || | || ||||| || || | | Sbjct 6784 ATGCAGATTTTCGTCAAGACCCTGACCGGAAAGACAATTACCCTTGAGGTCGAGTCGTCG 6725 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || | || || ||||| ||||||||||||||||| || || ||| Sbjct 6724 GATACCATCGACAATGTTAAGTCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAA 6665 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | |||||| ||| || |||| || |||||| Sbjct 6664 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACTCTCTCGGACTACAAC 6605 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 6604 ATTCAGAAGGAGTCTACC 6587 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | ||||| || || | || ||||| || || | | Sbjct 6556 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATTACCCTTGAGGTCGAGTCTTCT 6497 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || || || ||||||||||| || || || || || Sbjct 6496 GATACCATTGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 6437 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| || || ||| | ||||| || ||| | || || |||||| Sbjct 6436 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGTACCCTGTCTGACTACAAC 6377 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 6376 ATCCAGAAGGAGTCTACC 6359 >seq6490 Length=90610 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || |||||||| ||||| ||||| || | || ||||| ||| |||| ||||| || || Sbjct 85089 GTCAAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAG 85148 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 || | || || | ||| | |||| || || || ||||||||||| ||||| || Sbjct 85149 TCCTCGGACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCG 85208 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 || || || || || || || || ||||| ||| | |||||| ||||||| | || || Sbjct 85209 GACCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGAC 85268 Query 22393 TACAACATTCAAAA 22406 |||||||| || || Sbjct 85269 TACAACATCCAGAA 85282 >seq6283 Length=33863 Score = 98.7 bits (108), Expect = 8e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || ||||| || |||| || || || || | | || ||| | Sbjct 31067 TTTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCTTCGGACACCAT 31126 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| | |||| || || || ||||||||||||||||| || || ||||| || || Sbjct 31127 CGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAACAGCGCCT 31186 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || || ||||| ||| | |||||| ||||||| | || || |||||||| || || Sbjct 31187 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 31246 Query 22407 AGAATCCAC 22415 || ||||| Sbjct 31247 GGAGTCCAC 31255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419694534824230