Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6329 152 1e-31 seq6498 141 2e-28 seq6529 127 4e-24 seq6507 114 3e-20 >seq6329 Length=40134 Score = 152 bits (168), Expect = 1e-31 Identities = 438/671 (65%), Gaps = 7/671 (1%) Strand=Plus/Minus Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751 ||| || ||||| ||||| |||||||||||||||||||| || || |||||||||| | Sbjct 1924 GCCTGTTGGTTCGCTGTCCGGTGGTTGGAAGATGAAGCTTGCTCTGGCTCGCGCCATGTT 1865 Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811 | | ||||||||||| |||| ||||| || || |||||| |||| ||||||| Sbjct 1864 GCAGAAGGCCGATGTCCTGTTGCTGGATGAACCTACTAACCACTTGGATGTTGCCAACGT 1805 Query 279812 AGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871 ||||| | | |||||| | || | | | || | || |||||||| ||||| Sbjct 1804 CAAGTGGCTTGAGAACTACCTCAAGAGCCACACCGAGATTACCTCGCTCATTGTTTCTCA 1745 Query 279872 CGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAA 279931 ||||||||| ||||| || | || | ||| || ||||| ||| || ||| Sbjct 1744 CGACTCTGGTTTCCTTGACGAGGTCACCACTGATATTTACCACTACGAGGCCAACAAGAA 1685 Query 279932 GCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGC 279991 ||| || | || |||||||||| | |||||||| | |||||||||||| | Sbjct 1684 GCTGGCCCTGTACCACGGCAACCTGGCCGCTTTCGTCCAGATGCGCCCTGAGGCCAAGTC 1625 Query 279992 CTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGA 280051 ||||||| |||| | | | | ||| | ||||| || || | || Sbjct 1624 CTACTATACCCTGTCAGCTTCGTTGGTCCAGTTCAAGTTCCCCCCTCCTGGTATCCTCAC 1565 Query 280052 GGGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTAT 280109 || ||| || || ||| || ||||| | | ||| || ||| || Sbjct 1564 TGGTGTCAAGTCCAACACTCGTGCCATCATCCGCATGACCGATGC--TACCTACCAGTAC 1507 Query 280110 CCCAATGGCCCCAA---CATCTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGG 280166 ||||| | ||||| | | | |||| || | ||| | || || || || Sbjct 1506 CCCAAGGCGCCCAAGCCCTCCCTGAGCAACGTTTCTTGCCAGCTGACTCTGTCTTCGCGT 1447 Query 280167 ATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGC 280226 ||| | || || ||||||||||| |||||||| || || ||||| | ||||||| Sbjct 1446 GTTGCGATTATCGGCCCCAATGGTGCTGGTAAGTCAACTCTCATCAAGATGTTGACTGGT 1387 Query 280227 GAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286 ||| || | |||| |||| |||||| |||||| |||| || | |||| || Sbjct 1386 GAGGTTATTCCCTCGCAGGGTCGCGTTGAGAAGCACCCCAACCTGCGTATTGGTTACATC 1327 Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346 ||||||||| | | ||| | || | ||| |||| | |||||| ||||| ||| | Sbjct 1326 AAGCAGCACGCTCTTGAGCACGTTGAAATGCACTTGGAGAAGACTCCCAACCAGTACCTC 1267 Query 280347 CAGTGGCGCTA 280357 |||||||| || Sbjct 1266 CAGTGGCGTTA 1256 >seq6498 Length=96284 Score = 141 bits (156), Expect = 2e-28 Identities = 452/695 (65%), Gaps = 7/695 (1%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||| | |||||| | |||||||||||| || ||||| | | || || || | ||| Sbjct 26900 CTGAGACTGATCAATAAAGGCACCACGGTCGGCAGCCATCTGAACAACAGTACGCTGAGA 26959 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 |||||||| |||||||| | | ||||| || | |||||| | ||||| Sbjct 26960 AATCTCCCAAACAGTCTTGTAAAGAGACTTGATGTCCGCCGGAATGCTGGGGATGTTCTG 27019 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGC 293294 |||||| || || | ||| || |||||||||| | || ||||| ||| | | Sbjct 27020 GATAGAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTGTCCGACCACAGACCAAGGTC 27079 Query 293295 AATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACG 293354 || || ||||| | | ||| ||||||||| ||||||||||||| | || || Sbjct 27080 AACAAGATCGCGAAGCAACCAAGGGTTGACAACCTGGAACTCACCAGCCAACACACGGCG 27139 Query 293355 GCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAGT 293414 |||||||||||||||| || ||| ||| || |||||||| ||| Sbjct 27140 CTGGTAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGAGAAGT 27199 Query 293415 AGATGCGGTAGGCATAAGAGC-AGTCGTCAGAGAGTTCCTCACACCCTTCT---TGACAC 293470 || || || ||||| | || || | ||| ||||| | ||||| |||| ||| Sbjct 27200 TGACGCAGTGGGCATGGGCGCCAGAAG-CAGCGAGTTGCGAACACCGTTCTGCTTGATCT 27258 Query 293471 GCGATTCGAGACCCGCCCAGTCC-AGAGCAGTCTGAGGTGTAACACCCCAGAGATGATAC 293529 || | | | ||| ||| | || ||| || || ||| |||| | | || Sbjct 27259 GCTCCTTCAAAGAGTTCCAATCCCACAGGTCACTGGGG-GTGACATCCCACATGTCGAAC 27317 Query 293530 TGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATCA 293589 || | |||||||| ||||||| ||||| | || | | | || | || || Sbjct 27318 TGAAGGATACCCTGAGAAACAGGAGATCCCTCGTACGTCGAGTAAGTACCTTCAACAGCA 27377 Query 293590 GAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTTG 293649 | || ||||| || ||||| | ||||| ||||||| ||| ||||||| |||| Sbjct 27378 GCGATATCGCACGAAGCCTCCAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTG 27437 Query 293650 AGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCAGA 293709 |||| ||||||| |||| ||||| ||||| || | |||| |||| |||| Sbjct 27438 AGCTGACGAGCCTCGGCAGACTCAAAAGGCATACGAAGGGCCAGGAACGCATCGGCCAGA 27497 Query 293710 CCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAACC 293769 ||||| ||||| ||||||| ||| || ||||| |||| || || |||||| ||| Sbjct 27498 CCCTGAACACCAACACCAATGGGACGGTGACGCATGTTACTGTTCCGGGCCTCGACAACA 27557 Query 293770 GCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 | || ||||||||||| | | || || ||| Sbjct 27558 GGGTAGTGGTTCACATCAATGATACGGTTCAAGTT 27592 >seq6529 Length=132804 Score = 127 bits (140), Expect = 4e-24 Identities = 559/864 (65%), Gaps = 32/864 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| || | || ||||| |||||| |||||||||||||| | | Sbjct 77038 TCGAAGAAGTTGGTCTTTCCACCAAGGGAGATGTTCTCCATAAAGTCGAAGGGGTTGGAG 77097 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTAC--GAAGATGCGGTCTGCCACAAACTCCA 251680 || |||||| |||| | || || || || ||||| ||||| || || ||||| | Sbjct 77098 GCCTTGTACACCTTGTCGTTACCGAGAGCGACCAGAAGA--CGGTCGGCGACGAACTCGA 77155 Query 251681 GATACTGTCC-CATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAG 251739 ||| ||| ||| || |||| |||||| || | | | || |||| ||||| Sbjct 77156 TATAG-GTCTTCATGAGGTCAGCGTTCATACCGAGAAGAGCGCAGGGAAGAGCCTCGGTA 77214 Query 251740 ATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG-TGCCAG 251795 | ||| ||||| || || | || || || | || ||| ||| ||| | | | Sbjct 77215 AGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATGTCCTGGATCAACTGCTTGCTG 77274 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 | | | |||||| || | ||| | || || | |||| | ||| |||||||| Sbjct 77275 GGGCGG-TTGTTC---AGGTGAGAGAAAAGAAGGCAGGCAAAGTCCGTGTGAAGACCCTC 77330 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 || ||| ||| | ||||||||| | | ||| || ||||||| ||||| || | || Sbjct 77331 ATCACGAGAGATAAGCTCGTTGGAGAAAGTCAGACCGGGCATCATACCACGCTTGCGCAG 77390 Query 251916 CCAGAAGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAA 251974 ||||||||| | ||||||| | |||||||| | | |||||| ||| | | |||| Sbjct 77391 CCAGAAGATAGAGGCAAAAGCA-CCAGAGAAGAAGATACCCTCAACAGCGGCAAAGGCAA 77449 Query 251975 CAAGGCGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCT 252031 | || |||| ||||| ||||| | | | | ||||| | ||||| | |||| Sbjct 77450 CCAGACGCTGGGCAAAAGTCGACTCCTTGTCAGCAATCCACTTCAGGGCCCAGTCGGCCT 77509 Query 252032 TCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGT 252091 | | || ||| || || || || || | ||||| | | |||| ||| | Sbjct 77510 TGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGAGGTATGTGCGCTGAGCAGGCT 77569 Query 252092 CCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACA 252151 ||| |||| | |||| ||| | |||||| ||||||| |||||| || | | | Sbjct 77570 CCTTGATGTAGGTGTCAATCAGCAAAGAGTAGGTCTCCGAGTGGATGTTCTCCATCATGA 77629 Query 252152 TCTGGTAAGCATAGAATAGACGCGCGGAAGGG-TCGGTGACTTCCGTGGAAAAGTTGTTT 252210 ||||| || | ||||| ||| || ||| || | ||| || | || || | Sbjct 77630 TCTGGAAACCGTAGAAGCAACGGGCTTCGGGGATCTG-GACCTCAGCAGAGAAACGCTCG 77688 Query 252211 GCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATG 252270 | | |||||| | || || || || | || |||||| |||||| | |||| Sbjct 77689 ACCAAGTTCTCGTTGACAATACCGTCAGAAGCGGCGAAGAAGGCAAGAACGTGAGAGATG 77748 Query 252271 AAGTGACGCTCAT-CGTCGT--TGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGA 252327 ||| |||||| | | || || | |||| ||||||| || |||| | | | Sbjct 77749 AAGAACTGCTCATCCTTTGTCATGCGGTTGT---TCCAGTCGTGAAGATCCT--TGGAAA 77803 Query 252328 GG--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACAT 252385 || || || || | |||||||| | || | | ||||||||||||||| | | | Sbjct 77804 GGTCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCAGATCT 77863 Query 252386 CAGGGTACTTGATTGGGAA-AGCA 252408 | |||||||||| ||||| |||| Sbjct 77864 CGTGGTACTTGATAGGGAAGAGCA 77887 >seq6507 Length=104257 Score = 114 bits (126), Expect = 3e-20 Identities = 175/247 (71%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 279320 CGAAGCAGAGAAGGAGACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGC 279379 ||| || ||| |||| |||| |||||||||||||| |||| |||||||||||| Sbjct 26471 CGACGCTGAGGAGGACGATGAGGAGGGTGAGGATCTGTGCAACTGCACTTTCTCGCTCGC 26412 Query 279380 ATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTA 279439 || |||| |||||||| || ||| |||| ||| | |||||||| | || || Sbjct 26411 CTACGGTGCTAAGATTCTTCTTAACCAGACCCACCTTCGTCTTAAGCGTGGTCAGCGCTA 26352 Query 279440 TGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGG 279499 ||||| ||||||||| || | || ||| ||| || ||||| ||||| |||| Sbjct 26351 CGGTCTTTGCGGTCCCAACGGTTCCGGCAAGTCCACCCTCATGCGTGCCATCAACAACGA 26292 Query 279500 TCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGACA 279558 ||| | | ||| ||||| | ||| || ||||| | ||| || | || ||||||||| Sbjct 26291 GCAGGTTG-AGGGTTTCCCCAAGCAGTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACC 26233 Query 279559 TCGACTC 279565 | ||||| Sbjct 26232 TGGACTC 26226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027750647361822