Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq6283 163 5e-35 seq6394 158 2e-33 seq6329 127 4e-24 seq6529 123 5e-23 seq6507 105 1e-17 seq6498 84.2 4e-11 >seq6283 Length=33863 Score = 163 bits (180), Expect = 5e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||| ||| || |||||||| || |||||||| || || || Sbjct 31285 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 31226 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | |||||||| || ||| Sbjct 31225 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 31166 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 31165 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACC 31106 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||| ||||||||| || ||||| |||||||||||||| Sbjct 31105 TCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAA 31068 >seq6394 Length=53086 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || |||||||| || |||||||| |||||||| Sbjct 6786 CCACCACGAAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAA 6845 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || ||||| || || Sbjct 6846 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 6905 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | |||||| || ||||| || | || || || Sbjct 6906 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAACC 6965 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| ||||| || |||||||||||||| |||||||| Sbjct 6966 TCGAGGGTAATGGTCTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 7012 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| || || ||||| || || ||| Sbjct 6558 CCACCACGGAGACGGAGAACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAG 6617 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | |||||||| || ||| Sbjct 6618 AGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCCGGGGGA 6677 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||| || |||||||| || | || || || Sbjct 6678 ATACCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCCGACGACTCGACC 6737 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || ||||| || |||||||||||||| |||||||| Sbjct 6738 TCAAGGGTAATTGTCTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 6784 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || || ||||| || |||||||| || ||||| Sbjct 7014 CCACCACGAAGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAA 7073 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | || ||||| || || Sbjct 7074 AGGGTACGGCCGTCCTCCAGCTGCTTACCCGCAAAGATAAGACGCTGCTGGTCCGGAGGG 7133 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| | ||||||| ||||||||||| | || || || Sbjct 7134 ATACCCTCCTTATCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACC 7193 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || || |||||||| || |||||||| Sbjct 7194 TCAAGAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 7240 Score = 131 bits (144), Expect = 3e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || |||||||| || |||||||| ||||||||| Sbjct 7242 CCACCACGAAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAG 7301 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || ||||| || || | || ||||| || || Sbjct 7302 AGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 7361 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | |||||| || ||||| || | || || || Sbjct 7362 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAACC 7421 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||||||| || || |||| Sbjct 7422 TCGAGGGTGATGGTCTTGCCGGTGA 7446 >seq6329 Length=40134 Score = 127 bits (140), Expect = 4e-24 Identities = 433/669 (65%), Gaps = 17/669 (3%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||||| |||||||||||| ||| | |||| ||| | |||| || | | | Sbjct 1256 TAACGCCACTGGAGGTACTGGTTGGGAGTCTTCTCCAAGTGCATTTCAACGTGCTCAAGA 1315 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || ||||| | ||| | || |||| |||||| |||||| || ||| | | Sbjct 1316 GCGTGCTGCTTGATGTAACCAATACGCAGGTTGGGGTGCTTCTCAACGCGACCCTGCGAG 1375 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || |||| || || | | ||||||||| || | ||| || |||||||||||||| Sbjct 1376 GGAATAACCTCACCAGTCAACATCTTGATGAGAGTTGACTTACCAGCACCATTGGGGCCG 1435 Query 225158 ATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGA---AGATCTCA 225214 || | ||| || || |||| | | ||| | |||||||| | || || Sbjct 1436 ATAATCGCAACACGCGAAGACAGAGTCAGCTGGCAAGAAACGTTGCTCAGGGAGGGCTTG 1495 Query 225215 GG-GCCA----GTT-TGGTAAGCAAAGGCCACGC-CACGCAGCTTCATGATGGCACGGTC 225267 || ||| || ||||| | | || || || || | ||||||||||| Sbjct 1496 GGCGCCTTGGGGTACTGGTAGGTA---GCATCGGTCATGCGG----ATGATGGCACGAGT 1548 Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327 ||||| | | ||| |||| || || |||||||| ||| | || || | Sbjct 1549 GTTGGACTTGACACCAGTGAGGATACCAGGAGGGGGGAACTTGAACTGGACCAACGAAGC 1608 Query 225328 CTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCC 225387 |||| ||||| || ||||| || ||| | |||||||| | |||||| || Sbjct 1609 TGACAGGGTATAGTAGGACTTGGCCTCAGGGCGCATCTGGACGAAAGCGGCCAGGTTGCC 1668 Query 225388 GAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTC 225447 | ||| | | ||||| ||| |||||| || ||| | | | || |||| Sbjct 1669 GTGGTACAGGGCCAGCTTCTTGTTGGCCTCGTAGTGGTAAATATCAGTGGTGACCTCGTC 1728 Query 225448 AAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTG 225507 |||||| ||||||||||| || ||||||| || | | | || ||| |||||||| Sbjct 1729 AAGGAAACCAGAGTCGTGAGAAACAATGAGCGAGGTAATCTCGGTGTGGCTCTTGAGGTA 1788 Query 225508 CGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAG 225567 | ||||| |||||| || |||| |||||| |||||||| ||||| | ||| Sbjct 1789 GTTCTCAAGCCACTTGACGTTGGCAACATCCAAGTGGTTAGTAGGTTCATCCAGCAACAG 1848 Query 225568 GATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627 || || || | | |||||||| | |||| |||||||| ||||| || ||||| Sbjct 1849 GACATCGGCCTTCTGCAACATGGCGCGAGCCAGAGCAAGCTTCATCTTCCAACCACCGGA 1908 Query 225628 CAGGGAGCC 225636 ||| || || Sbjct 1909 CAGCGAACC 1917 >seq6529 Length=132804 Score = 123 bits (136), Expect = 5e-23 Identities = 292/439 (67%), Gaps = 8/439 (2%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 || ||| || ||||||||||| || || || |||||||||||||| ||| || | Sbjct 77001 CAGGACACCAGCCTTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACC 77060 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 ||||| ||| |||||| ||||| |||||||| ||| || |||| || ||| Sbjct 77061 AAGGGAGATGTTCTCCATAAAGTCGAAGGGGTTGGAGGCCTTGTACACCTTGTCGTTACC 77120 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || | || ||||| || ||||||||||| || |||| ||||| | ||| Sbjct 77121 GAGAGCGACCAGAAGACGGTCGGCGACGAACTCGATATAGGTCTTCATGAGGTCAGCGTT 77180 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 ||| || | | |||||| | || ||| || ||| ||||| || || |||| || Sbjct 77181 CATACCGAGAAGAGCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGC 77240 Query 10175 TTCCTCGACGATGCTCTTTACCA----CGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 || || |||| || | || | | ||| | | |||||| || | || Sbjct 77241 ATCAGTGATGATGTCCTGGATCAACTGCTTGCTGGGGC-GGTTGTTC---AGGTGAGAGA 77296 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 | || || |||| | | ||| || ||||| || || ||| | ||||||||| | Sbjct 77297 AAAGAAGGCAGGCAAAGTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGA 77356 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350 || |||||||||||| | || || |||||||||||||| || | | || | || | Sbjct 77357 AAGTCAGACCGGGCATCATACCACGCTTGCGCAGCCAGAAGATAGAGGCAAAAGCACCAG 77416 Query 10351 AGAACAGAAGACCCTCCAC 10369 |||| | | |||||| || Sbjct 77417 AGAAGAAGATACCCTCAAC 77435 >seq6507 Length=104257 Score = 105 bits (116), Expect = 1e-17 Identities = 656/1031 (64%), Gaps = 30/1031 (3%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| ||| ||| |||||| |||||| ||||| || |||||| Sbjct 25437 CGCCACTGGATGTACTCAGAGGGAGTCTTGTCCAAGTGGTTATCAATGTGAGCGAAAGCG 25496 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 25497 TGCTGCTTAATGTAAGCAATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 25556 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| ||||| ||||| ||||| || || | ||| || ||||| ||||| || || Sbjct 25557 ATGAG-CTCACCGGTAAGGACGTTGATCAGAGTCGACTTACCAGCACCGTTGGGACCGAT 25615 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGG--G 225217 ||| |||| ||||| || | ||| | | || | ||| |||| || Sbjct 25616 GACGGCAATACGGGAACCCAGGGAGCACTGGAAAGAAATGT--CCGAA-ATCTGGGGCTT 25672 Query 225218 CCAGTT----TGGTAAGCAAAGGCCACGCCACGCAGCTTCATG-ATGGCACGGTCCTTGG 225272 | || | |||| || | || | | ||| | | ||||| | |||||| Sbjct 25673 CGAGGTACCGGGGTACTGGAACGACA-TCTTGGTAGCACGAAGAATGGCCTTGGCCTTGG 25731 Query 225273 AAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCTTCA 225332 | | |||||| ||||| |||||||||||||| ||| | || | | | | | Sbjct 25732 TCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGCGGAACTCGATCTCAGAGGCGCCGA 25791 Query 225333 GGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGAGGT 225392 | ||||||||||| || ||| | ||| ||||| ||| |||||| || ||| Sbjct 25792 GCTCGTAGTAAGACTTGGCAGAGGGGCACTTCTTGACGAACTCAGCCAGGTTACCACGGT 25851 Query 225393 GCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCAAGG 225451 | | ||||||| | |||||| || | ||| ||| | ||| || ||||||| Sbjct 25852 AACGCTTAAGCTTGAAG---CGCTCGTAGTGGATAATGTGCTG-GCAGACATTGTCAAGG 25907 Query 225452 AAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGAGGTGCGT 225510 || ||||||||||| || |||||||| || | || | | || | ||||| || Sbjct 25908 AAACCAGAGTCGTGAGAGACAATGATCGAAGTGCAAG---GAGAGTTGC-AGAGGT-AGT 25962 Query 225511 GAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGA 225569 | |||||| ||||| | || |||| ||||| ||||| ||||| |||||||| | Sbjct 25963 CCTCGAGCCACTTAACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCAAGAAGCAGAA 26022 Query 225570 TGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACA 225629 | || | | | || || ||| || |||| ||||||||| ||||| || || || | Sbjct 26023 TATCGGGAGCCTCGAAGACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCACCAGAAA 26082 Query 225630 GGGAGCCGATTGAAACAG-AGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCGTCTGG 225688 ||| | || | ||| | | | || ||| |||||| |||| ||| || | Sbjct 26083 GGGCGGAAATCTCACCAGTAATCATCTGC-TCGGTGAAGCCGAACTCGGTAAGCTGCTTG 26141 Query 225689 AT--AATGC-GCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAATCA 225745 || || | || || | | || ||| | | | | | | | ||| Sbjct 26142 ATGACATCCTCCTTGGTGGTGGTGACCTTGGCCTCCTCAAGCTTCTTCATGGTCCACTCA 26201 Query 225746 TATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGC 225805 |||||| || | | ||| | ||| | |||||| || ||| | || ||| || | Sbjct 26202 ATGGTGGTCATCTCAGTGTCAGCAGAGTCCAGGTCGTGCTCGACGAAGACGGTCTTGACC 26261 Query 225806 TGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTC 225865 | || | |||||| ||||| | ||| | || || ||||| | ||||| | Sbjct 26262 TCGGACTGCTTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACGCATGAGGGTGGAC 26321 Query 225866 TTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGC 225925 ||||| | |||||||||||| || ||||| | | || ||||| | ||| | Sbjct 26322 TTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGACCACGCTTAAGACGAAGGTGG 26381 Query 225926 GTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCC 225985 || ||| || || ||||| |||| ||||| || ||||| ||| | |||||| ||| Sbjct 26382 GTCTGGTTAAGAAGAATCTTAGCACCGTAGGCGAGCGAGAAAGTGCAGTTGCACAGATCC 26441 Query 225986 TCACCCTCCTC 225996 ||||||||||| Sbjct 26442 TCACCCTCCTC 26452 >seq6498 Length=96284 Score = 84.2 bits (92), Expect = 4e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 31395 GCGAGTTCGCAAGAGGCCTCCACCGCTGCAAAGTAAATATTCTCAAAGATTTCCCGGTTG 31454 |||| ||||| || ||||||| || || |||||| |||||||||| | | |||| Sbjct 27378 GCGATATCGCACGAAGCCTCCAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTG 27437 Query 31455 AGGTTCTTGGCCGCGTCAGAGTCAAAAGGCATGCGCAGCTTGAAGAACACGTCCTGAAGA 31514 || | ||| || |||| ||||||||||| || || | |||| | || ||| Sbjct 27438 AGCTGACGAGCCTCGGCAGACTCAAAAGGCATACGAAGGGCCAGGAACGCATCGGCCAGA 27497 Query 31515 CCCTGGACACCCACTCCAATTGGGCGCCGGCGCATGTTACTAGTCTTCGCCTCG 31568 ||||| ||||| || ||||| || || | ||||||||||| || |||||| Sbjct 27498 CCCTGAACACCAACACCAATGGGACGGTGACGCATGTTACTGTTCCGGGCCTCG 27551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921547034328240