Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6394 118 9e-22 seq6283 86.0 5e-12 >seq6394 Length=53086 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| | || | ||||| || || ||||||||||| || Sbjct 6555 ATACCACCACGGAGACGGAGAACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCC 6614 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||| ||||| || ||||||||| | || || |||||||||||||| Sbjct 6615 GAGAGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCCGGG 6674 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| || | | || | ||| || | || ||| Sbjct 6675 GGAATACCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCCGACGACTCG 6734 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || |||||||| || || || ||||||||||| Sbjct 6735 ACCTCAAGGGTAATTGTCTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 6784 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| || || |||||| || || || || |||||| Sbjct 6360 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTCCTCCAGCTGCTTACCA 6419 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| |||||||| ||||||||||| ||||| || ||||| ||||| || Sbjct 6420 GCAAAGATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTG 6479 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || | || ||||| || | ||| | || || ||||||||||| Sbjct 6480 ACGTTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTTCCGGTCAGAGTC 6539 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 6540 TTCACGAAGATCTGCAT 6556 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | ||||| || || || |||||||| ||| Sbjct 7011 ATACCACCACGAAGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 7070 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| || || || || ||||| || |||| |||||||| ||||||||| Sbjct 7071 GAAAGGGTACGGCCGTCCTCCAGCTGCTTACCCGCAAAGATAAGACGCTGCTGGTCCGGA 7130 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || |||||| || | | || | |||||| | ||| || Sbjct 7131 GGGATACCCTCCTTATCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCAGAGGACTCA 7190 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || ||||| |||||||| || ||||| |||||||| Sbjct 7191 ACCTCAAGAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 7240 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||||||| Sbjct 6783 ATACCACCACGAAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCG 6842 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || || || || |||||| | || || ||||| |||||||| Sbjct 6843 GAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGG 6902 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | |||| ||| |||| ||| || Sbjct 6903 GGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCA 6962 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || |||||||| || || || ||||||||||| Sbjct 6963 ACCTCGAGGGTAATGGTCTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 7012 >seq6283 Length=33863 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | || || || || || |||||||| || Sbjct 31288 ATACCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCC 31229 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| ||||| || || |||||| |||| || |||||||||||||| Sbjct 31228 GACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGG 31169 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | || | |||||| | || ||| Sbjct 31168 GGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCG 31109 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 || |||| ||| | || || || ||||| || || || ||| Sbjct 31108 ACCTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAAA 31067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420100902421704