Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6529 351 2e-91 seq6498 188 1e-42 >seq6529 Length=132804 Score = 351 bits (388), Expect = 2e-91 Identities = 604/870 (69%), Gaps = 18/870 (2%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| || |||||| |||||||||||||| || ||| |||||||||| Sbjct 77876 ATCAAGTACCACGAGATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCC 77817 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCAC---TGTCTGAGAACGAA 42401 |||||||||||||| ||||||| || |||| | | || | || | || Sbjct 77816 GAGGAGATTGACCTTTCCAAGGATCTTCACGACTGGAACAACCGCATGACAAAGGATGAG 77757 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 |||| ||| || || | || |||||||||||||| |||||||| || ||||| ||| Sbjct 77756 CAGTTCTTCATCTCTCACGTTCTTGCCTTCTTCGCCGCTTCTGACGGTATTGTCAACGAG 77697 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 ||| ||| | | ||| ||||| ||| | || || || ||||||||||| Sbjct 77696 AACTTGGTCGAGCGTTTCTCTGCTGAGGTCCAGATCCCCGAAGCCCGTTGCTTCTACGGT 77637 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 |||||||| || |||||| | ||||| ||| ||| | ||| | |||| ||| Sbjct 77636 TTCCAGATCATGATGGAGAACATCCACTCGGAGACCTACTCTTTGCTGATTGACACCTAC 77577 Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 ||| ||| || | |||| | || ||||| ||||| || || || |||||||| Sbjct 77576 ATCAAGGAGCCTGCTCAGCGCACATACCTCTTCAACGCCATTGACACTATTCCCTGCATT 77517 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701 ||||| |||||||| || || ||||| | || | || || | | || Sbjct 77516 CGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTGCTGACAAGGAGTCGACTTTTGCCCAG 77457 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 | ||||| |||||| |||| || ||||| ||||||||||| || || || ||||| ||| Sbjct 77456 CGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCTATC 77397 Query 42762 TTCTGGCT---CAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 |||||||| ||||| ||| | ||||||||| || || ||||| ||||| || ||| Sbjct 77396 TTCTGGCTGCGCAAGCGT--GGTAT-GATGCCCGGTCTGACTTTCTCCAACGAGCTTATC 77340 Query 42819 AGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGG 42878 | || ||||| || || | ||||||||||||||| || ||||| ||||| | Sbjct 77339 TCTCGTGATGAGGGTCTTCACACGGACTTTGCCTGCCTTCTTTTCTCT---CACCTGA-- 77285 Query 42879 CACAA--GCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAG 42935 |||| |||| | ||| || | ||| || ||||||||| || ||||| | || ||| Sbjct 77284 -ACAACCGCCCCAGCAAGCAGTTGATCCAGGACATCATCACTGATGCCGTCGTCATTGAG 77226 Query 42936 AAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATG 42995 ||||||||||| || || | || ||| | || |||| |||||| ||||||||| Sbjct 77225 AAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCTCTTCTCGGTATGAACGCTGACCTCATG 77166 Query 42996 TGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTC 43055 | || ||| ||| ||||||||||| ||| ||| | | ||| | | | Sbjct 77165 AAGACCTATATCGAGTTCGTCGCCGACCGTCTTCTGGTCGCTCTCGGTAACGACAAGGTG 77106 Query 43056 TACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAAC 43115 ||||| | | ||||||||||||||||||||||||||| | | || ||||||||| Sbjct 77105 TACAAGGCCTCCAACCCCTTCGACTTTATGGAGAACATCTCCCTTGGTGGAAAGACCAAC 77046 Query 43116 TTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 || ||||||||||| || | || |||||| Sbjct 77045 TTCTTCGAGAAGCGTGTTGGTGATTACCAG 77016 >seq6498 Length=96284 Score = 188 bits (208), Expect = 1e-42 Identities = 877/1374 (64%), Gaps = 51/1374 (4%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || ||| ||||||||||| | ||| || || Sbjct 27104 GTTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTCGAAGTGTAAGG 27163 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||| ||||| ||||| | || |||||| |||||||||| || Sbjct 27164 CTCGAAGCACTCGTTGTTACCCAGAATCTGAGAAGTTGACGCAGTGGGCATGGGCGCCAG 27223 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGAT--GCGGAGTCTGAGCTCGTTCCAGTCC 244267 ||||| ||| | || |||| | || ||| || || || |||||| ||| Sbjct 27224 AAGCAGCGAGTTGCGAACACCGTTCTGCTTGATCTGCTCCTTCAAAGA--GTTCCAATCC 27281 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 |||| |||| | | ||| |||||||||| ||||| || | |||| Sbjct 27282 CACA---------GGTCACTGGGGGTGACATCCCACATGTCGAACTGAAGGATACCCTGA 27332 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCT-TACAGCT 244386 || || |||||||| |||| ||| | ||| || | | |||| || || Sbjct 27333 GAAACAGGAGATCCCTCGTACGTCGAGTAAGTACCTTCAA-CAG---CAGCGATATCGCA 27388 Query 244387 CT---CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGC 244443 | | || ||||| |||| ||| |||||||| |||||| |||||| | | || || Sbjct 27389 CGAAGCCTCCAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAGCTGACGAGC 27448 Query 244444 CTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCC 244503 || | | | || || || | | || ||| | |||||||| ||||| || || Sbjct 27449 CTCGGCAGACTCAAAAGGCATACGAAGGGCCAGGAACGCATCGGCCAGACCCTGAACACC 27508 Query 244504 GATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTT 244563 | || ||||| | ||| ||| |||| | | ||| ||| || ||||| ||| Sbjct 27509 AACACCAATGGGACGGTGACGCATGTTACTGTTCCGGGCCTCGACAACAGGGTAGTGGTT 27568 Query 244564 GCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTG 244623 | || || | ||| | ||||||| | | | ||| ||| |||| ||| Sbjct 27569 CACATCAATGATACGGTTCAAGTTGCGGACAACAACCTTGGTGACATCGTGCAGCTTCTG 27628 Query 244624 AAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGA- 244682 |||||||| || | | || | | || | ||||| | ||| || | Sbjct 27629 GAAGTCGTAGCAGTTG------TTGGTG-TAGTCA-----ACAAAGGCAGGGAGAGCAAG 27676 Query 244683 CGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGC 244742 || || ||| |||||| || || ||||| || | | ||||| || |||||| |||| Sbjct 27677 CGATG-CCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGTACTCGATAATCTCAGTGC 27735 Query 244743 AGAGGTT---ACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGG 244799 | ||||| ||||| || || ||||||| || || || |||| ||||||| Sbjct 27736 AAAGGTTGGAACTGCGA---ATAGTTCCCAGGTTCTTTTGGTTACTCTTGCGGTTGCAGT 27792 Query 244800 CGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCC 244859 |||||||| | |||||| || || ||||| ||| || | || | | | || Sbjct 27793 GATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATGGCATACC 27852 Query 244860 AGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCT--CTGCCTCGTAGCGGGTGTA 244917 | || | | |||||||| || || ||| | ||| |||| ||||| | ||| Sbjct 27853 ACAGCTTCTGAGCCTTGATGGTAAGACG-GCCACGTCCTTCCTGC-TCGTACTTGACGTA 27910 Query 244918 CAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACAT 244977 || |||||||| || || || || | | ||| |||||| |||||||| Sbjct 27911 AAGAGCCTCGAATTCCTCACCGTAGCAATCAGCCAAGCCAGGGCACTCGTTGGGGCACAT 27970 Query 244978 GAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGC 245037 ||| |||| |||||| | || || | || |||||| | ||| |||||||| ||||| Sbjct 27971 GAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAGTCAGGGATCCACAGGGC 28030 Query 245038 CTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAA 245097 |||| | || | | | ||| ||| || |||||||| || || | || Sbjct 28031 AAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGAAGGTCAAGGAA 28090 Query 245098 GTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTT 245157 ||||| || || ||||||| ||||||| ||| | || | || || || |||||||| Sbjct 28091 CTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTGTT 28150 Query 245158 GCCTCCCTGGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGC 245216 ||| ||||| || || | | || | |||||| | ||||| |||| || || | Sbjct 28151 GCCACCCTGATCGACGTAACGGGC-AGTGTTGTTGAACACACGCAGCATAGGAACAATAC 28209 Query 245217 CGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGAT 245274 |||| ||| ||||| ||||| ||||||| || | | | | | | || | Sbjct 28210 CGTTCGAGGTACCGTTAGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGAACGT 28269 Query 245275 GGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGC 245334 || | || | || || || ||||||||| | || ||| |||||| ||| || Sbjct 28270 TGAGA--CCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATA 28327 Query 245335 TATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTT 245394 || || || || |||||| |||||||| | || |||||||| || ||||| |||| Sbjct 28328 GATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTG 28387 Query 245395 GGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGA 245448 ||| | | | |||||| || || || |||||| || ||| | |||||| Sbjct 28388 AGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGA 28441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944261976661920