Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6394 113 1e-19 seq6529 107 5e-18 seq6283 98.7 2e-15 seq6490 89.7 1e-12 seq6519 84.2 5e-11 >seq6394 Length=53086 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | ||| || || ||||| || || |||| Sbjct 6786 CCACCACGAAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAA 6845 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||| ||||| ||||| || ||| Sbjct 6846 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGG 6905 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || || || || || | |||| || || || Sbjct 6906 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAACC 6965 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || ||||| |||||||| ||||||||||| |||||||| Sbjct 6966 TCGAGGGTAATGGTCTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 7012 Score = 107 bits (118), Expect = 5e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | || || || ||||| || ||||||| Sbjct 7014 CCACCACGAAGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAA 7073 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || || ||||| |||||||| || ||| Sbjct 7074 AGGGTACGGCCGTCCTCCAGCTGCTTACCCGCAAAGATAAGACGCTGCTGGTCCGGAGGG 7133 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||| || |||| || ||||| || || | || || || || Sbjct 7134 ATACCCTCCTTATCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACC 7193 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || |||||||||||||| || |||||||| Sbjct 7194 TCAAGAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 7240 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || |||| || || || || || || ||||| | | Sbjct 6558 CCACCACGGAGACGGAGAACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAG 6617 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || ||||| ||||| |||||||| || ||| Sbjct 6618 AGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGG---TCCGGG 6674 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| || |||| || || || || || | ||| ||| || Sbjct 6675 GGAATACCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCCGACGACTCG 6734 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| |||||||| ||||||||||| |||||||| Sbjct 6735 ACCTCAAGGGTAATTGTCTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 6784 Score = 100 bits (110), Expect = 7e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || || || ||||| || | || || || || ||| Sbjct 6366 TCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTCCTCCAGCTGCTTACCAGCAAAG 6425 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTT 288401 || |||||||| || ||||| || || || |||||||| || ||| || ||||| Sbjct 6426 ATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTT-GCTCTTGACGTT 6484 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| || || || || || || || ||||| |||||||||||||| || Sbjct 6485 GTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCAC 6544 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 6545 GAAGATCTGCAT 6556 >seq6529 Length=132804 Score = 107 bits (118), Expect = 5e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 269113 GAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTC 269172 || || |||||| || || ||| | || || || | |||||||||| || || ||| Sbjct 77228 GAGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCTCTTCTCGGTATGAACGCTGACCTC 77169 Query 269173 ATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACG--GCACTCGGTTATGAGA 269230 ||||| |||||||| ||||| || || ||| |||| | || |||||| | || | Sbjct 77168 ATGAAGACCTATATCGAGTTCGTCGCCGACCGT--CTTCTGGTCGCTCTCGGTAACGACA 77111 Query 269231 AAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGA 269290 | |||||||| | || ||||||| ||||||||| || || || | ||||||| Sbjct 77110 AGGTGTACAAGGCCTCCAACCCCTTCGACTTTATGGAGAACATCTCCCTTGGTGGAAAGA 77051 Query 269291 CGAACTTCTTCGAAAAGCGTGT 269312 | ||||||||||| |||||||| Sbjct 77050 CCAACTTCTTCGAGAAGCGTGT 77029 >seq6283 Length=33863 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| || || ||||| || ||||| | Sbjct 31285 CCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAC 31226 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||| |||||||| || ||| Sbjct 31225 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGG---TCCGGG 31169 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || ||||| || || | || || || Sbjct 31168 GGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCG 31109 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || || || ||||| ||||| || ||||| ||||||||||| Sbjct 31108 ACCTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAA 31068 >seq6490 Length=90610 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | || ||||| || || || | || || || ||||| ||| Sbjct 85282 TTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAATC 85223 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||| || || ||| || || || || |||||||| || | || ||||| Sbjct 85222 AGGCGCTGCTGG---TCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 85166 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || || ||||||||||| || || || ||||| ||| Sbjct 85165 TCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACG 85106 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 85105 AAAATCTGCAT 85095 >seq6519 Length=116256 Score = 84.2 bits (92), Expect = 5e-11 Identities = 194/288 (67%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 326023 |||| ||| || ||||| | || |||||||| ||||| | || || |||||| Sbjct 61367 ACGACAGGAGTAATGAATTCTTTGAAGAACCCGGGAATCTTGAGCAGTGAAGGGAACTGA 61308 Query 326024 CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 326083 || || ||||| || | ||||| || || | || || |||| |||| | Sbjct 61307 ACCTGCAAGAAGTTGATCAAAAGACCCTTGATATGCGAACCATCGTGATCCTGATCGGCC 61248 Query 326084 ATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCG-GTTTG 326142 |||||||||| |||||| |||||||| | || ||| | || ||| | | | ||| Sbjct 61247 ATGATCATCAGATGACCATAACGAAGTGTCTTGGTATCTGTATAAACTGTCTTGTGCTTG 61188 Query 326143 AAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG--CCACG 326200 | || |||| ||||||| | ||||||| |||||| || || ||| ||| Sbjct 61187 AGACCCAAGAA-CTGTTTGATATTTTGAATTTCTTGGTTCTTGGTAAT--TTGGTCCAAA 61131 Query 326201 GATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCA 326248 || ||||| ||||| ||||| | || |||||||| ||||| || ||| Sbjct 61130 GAAGCATCACGGACATTCAACATCTTACCACGAAGTGGGAAAACACCA 61083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179555522105476