Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq6529 138 2e-27 seq6519 87.8 4e-12 >seq6529 Length=132804 Score = 138 bits (152), Expect = 2e-27 Identities = 306/454 (67%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 ||||| ||||||| || |||| | ||||| ||||| | || || || ||| Sbjct 77465 TTTGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTT 77406 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 243408 | | ||||| |||||||| || ||| ||||||| || || | | || |||||| Sbjct 77405 GCCTCTATCTTCTGGCTGCGCAAGCGTGGTATGATGCCCGGTCTGACTTTCTCCAACGAG 77346 Query 243409 TTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTC 243468 | ||| ||| || ||||| |||||| | || | ||| | | || | || Sbjct 77345 CTTATCTCTCGTGATGAGGGTCTTCACACGGACTTTGCCTGCCTTCTTTTCTCTCACCT- 77287 Query 243469 CAGAACAAGCTACCATTCGAAACGGTCAAACAA----ATCATCACAGAAGCAGTTGAAAA 243524 |||||| | || | || | || | | | |||||||| || || || | | Sbjct 77286 --GAACAACCGCCCCAGC-AAGCAGTTGATCCAGGACATCATCACTGATGCCGTCGTCAT 77230 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 || ||||| ||| || ||| ||| |||| ||| ||| | || |||||| |||| || Sbjct 77229 TGAGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCTCTTCTCGGTATGAACGCTGACCT 77170 Query 243585 CATGG-GACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGA 243643 |||| ||| || ||||| ||||| |||||||| || | |||| || ||| | || | Sbjct 77169 CATGAAGACC-TATATCGAGTTCGTCGCCGACCGTCTTCTGGTCGCTCTCGGTAACGACA 77111 Query 243644 AAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAA 243703 | |||||||| || |||||||| | |||||||||| ||| || ||| || || | Sbjct 77110 AGGTGTACAAGGCCTCCAACCCCTTCGACTTTATGGAGAACATCTCCCTTGGTGGAAAGA 77051 Query 243704 CTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 | ||||||||||| |||||||| ||||||| || Sbjct 77050 CCAACTTCTTCGAGAAGCGTGTTGGTGATTACCA 77017 >seq6519 Length=116256 Score = 87.8 bits (96), Expect = 4e-12 Identities = 195/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 298085 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 298144 |||| ||| || ||||| | || |||||||| ||||| | || || |||||| Sbjct 61367 ACGACAGGAGTAATGAATTCTTTGAAGAACCCGGGAATCTTGAGCAGTGAAGGGAACTGA 61308 Query 298145 CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 298204 || || ||||| || | ||||| || || | || || |||| |||| | Sbjct 61307 ACCTGCAAGAAGTTGATCAAAAGACCCTTGATATGCGAACCATCGTGATCCTGATCGGCC 61248 Query 298205 ATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCG-GTTTG 298263 |||||||||| |||||| |||||||| | || ||| | || ||| | | | ||| Sbjct 61247 ATGATCATCAGATGACCATAACGAAGTGTCTTGGTATCTGTATAAACTGTCTTGTGCTTG 61188 Query 298264 AAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG--CCACG 298321 | || |||| | |||||| | ||||||| |||||| || || ||| ||| Sbjct 61187 AGACCCAAGAACT-GTTTGATATTTTGAATTTCTTGGTTCTTGGTAAT--TTGGTCCAAA 61131 Query 298322 GATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCA 298369 || ||||| ||||||||||| | || |||||||| ||||| || ||| Sbjct 61130 GAAGCATCACGGACATTCAACATCTTACCACGAAGTGGGAAAACACCA 61083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102787557287700