Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq6498 143 3e-29 seq6529 105 8e-18 >seq6498 Length=96284 Score = 143 bits (158), Expect = 3e-29 Identities = 656/1028 (64%), Gaps = 18/1028 (2%) Strand=Plus/Plus Query 113903 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 113962 |||||||| |||||||| || | || | | | || || || | ||||| ||| Sbjct 27105 TTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTCGAAGTGTAAGGC 27164 Query 113963 TCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATG 114022 || |||||||| |||||||||| || || | || || || ||||||||||| |||| Sbjct 27165 TCGAAGCACTCGTTGTTACCCAGAATCTGAGAAGTTGACGCAGTGGGCATGGGCGCCAGA 27224 Query 114023 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA- 114081 || || ||| || | ||| || | | | || | ||||| | | || ||| || | Sbjct 27225 AGCAGCGAGTTGCGAACACCGTTCTGCTTGATCTGCTCCTTCAAAGAGTTCCAATCCCAC 27284 Query 114082 -GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCG 114140 | | | || | | | | |||||| || ||||| |||||||| || || | || | Sbjct 27285 AGGTCA-CTGGGGGTGACA-TCCCACATGTCGAACTGAAGGATACCCTGAGAAACAGGAG 27342 Query 114141 ATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGG 114200 ||||||| | ||| ||| | || ||||| | || | ||| | ||||| |||| Sbjct 27343 ATCCCTCGTACGTCGAGTAAGTACCTTCAACAGCAGCGATATCGCACGAAGCCTCCAGGG 27402 Query 114201 CTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCA 114259 | ||||| || || |||||||| || | || | || | | ||||| | || ||| Sbjct 27403 CAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAGCTGACGAG-CCTCGGCAGACTCA 27461 Query 114260 AACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGG 114319 || | | || | || |||| || ||||| || ||||| | ||||| || Sbjct 27462 AAAGGCATACGAAGGGCCAGGAACGCATCGGCCAGACCCTGAACACCAACACCAATGGGA 27521 Query 114320 CGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACC 114379 || || | ||| ||| || || || | || || || ||| ||| || | Sbjct 27522 CGGTGACGCATGTTACTGTTCCGGGCCTCGACAACAGGGTAGTGGTTCACATCAATGATA 27581 Query 114380 CTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAAC-- 114437 | || | || | |||||||| |||| || || ||||| | | | || | | Sbjct 27582 CGGTTCAAGTTGCGGACAACAACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAG 27641 Query 114438 -TGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAG 114496 || || | ||| ||| | ||| || || | || |||| || ||||||| | Sbjct 27642 TTGTTGGTGTAGTCA---ACAAAGGCAGGGAGAGCAAGCGATGCCAAGTTGCACACAGCG 27698 Query 114497 GTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTG 114556 |||||| | | |||||| ||||| || || || | || ||||| ||| || Sbjct 27699 ACCTCATCAGGAGCGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGAATAGTT 27758 Query 114557 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 114616 |||| ||||||||| || ||| ||| || ||||||||| | |||| | || | Sbjct 27759 CCCAGGTTCTTTTGGTTACTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTA 27818 Query 114617 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGT--G 114673 || |||||||| || | | ||||| || | ||| | | || | | || | | || | Sbjct 27819 CCAGTCTCCGTCTGAGCTTCCAGAATGGCATACCACAGCTTCTGAGCCTTG-ATGGTAAG 27877 Query 114674 GCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACG 114733 || | | || || |||| ||||||||| ||| || || || || || ||||| | Sbjct 27878 ACG--GCCACGTCCTTCCTGCTCGTACTTGACGTAAAGAGCCTCGAATTCCTCACCGTAG 27935 Query 114734 GCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCA 114793 || | | || || || | ||||| | ||| | ||||| || || |||| Sbjct 27936 CAATCAGCCAAGCCAGGGCACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCTTCTCA 27995 Query 114794 ACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCT 114853 |||||||||||||| | ||| |||||||| || || ||| | ||| ||| |||| Sbjct 27996 ACACGCTTCATGAACAAGTCAGGGATCCACAGGGCAAGGAACAAATCGCGAGCGCGAATC 28055 Query 114854 TCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGT 114913 || || | || || || || | || | || || | | ||| ||||||||||| Sbjct 28056 TCCTCCTTACCGTGGTTCTTCCGAAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGC 28115 Query 114914 TCCAGGTA 114921 |||||||| Sbjct 28116 TCCAGGTA 28123 >seq6529 Length=132804 Score = 105 bits (116), Expect = 8e-18 Identities = 326/500 (65%), Gaps = 16/500 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || ||||| ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 77019 GTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGGGAGATGTTCTCCAT 77078 Query 125818 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 125872 ||| || || ||||| | ||| | || |||| | ||| | | || Sbjct 77079 AAAGTCGAAGGGGTTGGAGGCCTTG---TACACCTTGTCGTTACCGAGAGCGACCAGA-- 77133 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 125932 ||||| || | |||| |||| || || ||| |||| ||||||||||| || Sbjct 77134 AGACGGTCGGCGACGAACTCGATATAGGTCTTCATGAGGTCAGCGTTCATACCGAGAAGA 77193 Query 125933 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATG 125992 || || || || || | |||| |||||||||| | ||||| || | |||| Sbjct 77194 GCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATG 77253 Query 125993 GCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAAC 126052 | || || | | | || | ||| || ||| || |||||| Sbjct 77254 TCCTGGATCAACTGCTTGCTGGGGCGGTTGTTCAGGTGAGAGAAAAGAAGGCAGGCAAAG 77313 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 || ||| |||||||| ||||| ||||| || || || ||||| ||| || ||||| Sbjct 77314 TCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAGACCGGGCATC 77373 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 | ||| ||||| || |||||| || | ||| | ||| ||||||||||| ||||| Sbjct 77374 ATACCACGCTTGCGCAGCCAGAAGATAGAGGCAAAAGCACCAGAGAAGAAGATACCCTCA 77433 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACT--TTGT-GTCAAACCAC 126229 ||| || || |||| ||||||| ||||| | ||||| |||| ||| |||| Sbjct 77434 ACAGCGGCAAAGGCAACCAGACGCTGGGCAAAAG---TCGACTCCTTGTCAGCAATCCAC 77490 Query 126230 TTCATCGCCCACTGCGCCTT 126249 |||| ||||| | ||||| Sbjct 77491 TTCAGGGCCCAGTCGGCCTT 77510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597304751409360