Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq6394 98.7 1e-15 >seq6394 Length=53086 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || ||||||||||| | | |||||| | || || ||||||||||| Sbjct 6816 GTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 6875 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| || ||||||||||| || || || || || || || || || || ||| Sbjct 6876 GCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 6935 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||||| || || || || | || | |||||| ||||||| || Sbjct 6936 ACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTAATGGTCTTTCCGGTCAGGGTC 6995 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 6996 TTGACGAAAATCTGCAT 7012 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || ||||||||||| || | || || || | || Sbjct 6573 AGAACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGAGTACGGCCATCC 6632 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| || || |||| || ||||| ||||| || ||||| || || || || Sbjct 6633 TCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCC 6692 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGG 64409 || || || ||| ||| || | |||| ||| || || || || | || | | Sbjct 6693 TGAATCTTCGACTTAACATTGTCGATGGTAT--CCGACGACTCGACCTCAAGGGTAATTG 6750 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| ||||||| || || |||||||| ||||| Sbjct 6751 TCTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 6784 Score = 91.5 bits (100), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || ||||||||||| | || |||||| | || |||||||||||||| Sbjct 7272 GTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCA 7331 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| || ||||||||||| || || || || || || || || || || ||| Sbjct 7332 GCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 7391 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| || | ||||| || || || || | || | |||||||||||| Sbjct 7392 ACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 7444 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||| || |||| || |||||||| || Sbjct 6360 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTCCTCCAGCTGCTTACCA 6419 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || ||||||||||| ||||| || || || || || || || || ||| Sbjct 6420 GCAAAGATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTG 6479 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | |||||| | || || || | || | |||||| ||||||| ||| Sbjct 6480 ACGTTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTTCCGGTCAGAGTC 6539 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 6540 TTCACGAAGATCTGCAT 6556 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||| || |||| || |||||||| || Sbjct 7044 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCCAGCTGCTTACCC 7103 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || ||||||||||| ||||| || || || || || || || || ||| Sbjct 7104 GCAAAGATAAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGAATCTTCGACTTG 7163 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || ||| || || || || | ||| | ||||||||| |||| ||| Sbjct 7164 ACGTTGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGTCTTGCCAGTCAGAGTC 7223 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 7224 TTGACAAAGATCTGCAT 7240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499603941546480