Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq6498 181 1e-40 >seq6498 Length=96284 Score = 181 bits (200), Expect = 1e-40 Identities = 609/937 (65%), Gaps = 42/937 (4%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| || || || ||||| | || ||||| |||||| | |||||| Sbjct 28597 AACTACCAGTACTTTGGATTTAAGACCCTGGAAAGATCTTACCTTCTCAAGCTTGATGGC 28538 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || |||||| || || || || | ||||| || || |||| || || | Sbjct 28537 AAGATTGTCGAGCGTCCTCAGCACATGATTATGCGTGTTGCTGTCGGTATCTGGGGTGAT 28478 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 | | | |||| || ||| || |||| | |||| | || ||| Sbjct 28477 AATGTTGAGCGTGTTCTGGAAACTTACAACCTCATGTCGAGCAAGTTCTTCACTCACGCC 28418 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | || ||||| |||||||| || ||||| ||| ||| | ||||| || ||| || | Sbjct 28417 TCTCCTACCCTCTTCAACGCCGGTACCCCTCAGCCTCAGCTTTCTTCCTGCTTCTTGGTA 28358 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| ||| || || | || | ||||||| |||||| | || Sbjct 28357 GAC-ATGAAGGAGGACAGTATCGAAGGTATCTATGATACCCTCAAGACCTGTGCTATGAT 28299 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCC 94071 ||| || ||||| || ||||| ||| || ||| |||| ||||| | |||||| Sbjct 28298 CTCCAAGATGGCGGGTGGTATCGGTCTCAACGTTCAC--CGTATCCGTGCTACTGGTTCC 28241 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||| || || || ||||| ||||| | || |||||||| || || |||||| Sbjct 28240 TACATTGCCGGCACTAACGGTACCTCGAACGGTATTGTTCCTATGCTGCGTGTGTTCAAC 28181 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || || ||||| || |||||||| | | | ||| |||| || | || Sbjct 28180 AACACTGCCCGTTACGTCGATCAGGGTGGCAACAAGCGTCCTGGTGCTTTTGCCATTTAC 28121 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| || ||| | ||| | ||||| || ||||||||||| || Sbjct 28120 CTGGAGCCGTGGCACGCTGATGTGTTTGAGTTCCTTGACCTTCGGAAGAACCACGGTAAG 28061 Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || ||||| | || | || | ||| || || ||| | || ||| | || ||| Sbjct 28060 GA---GGAGATTCGCGCTCGCGATTTGTTCCTTGCCCTGTGGATCCCTGACTTGTTCATG 28004 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || || || ||||| ||| || |||| || | || ||||| || || || || || Sbjct 28003 AAGCGTGTTGAGAAGAACGGCGAATGGACCCTCATGTGCCCCAACGAGTGCCCTGGCTTG 27944 Query 94369 TCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAG 94428 | || || || ||| || || | |||| ||||| || || | || Sbjct 27943 GCTGA-----TTGCTACG----GTGAGGAATTCGAGGCTCTTTACG--TC-AAGTACGAG 27896 Query 94429 GCCAGGAAGG-----------TT---ATGGATGCTAGGAAGCTGTGGGATCAGATCGTGG 94474 |||||||| || || | ||| |||||||||| || || ||| Sbjct 27895 --CAGGAAGGACGTGGCCGTCTTACCATCAAGGCTCAGAAGCTGTGGTATGCCATTCTGG 27838 Query 94475 ACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAG 94533 | | ||| |||||| |||| || | ||| |||| |||||| | ||| |||| |||| Sbjct 27837 AAGCTCAGACGGAGACTGGTAACCCTTTCATGTTGTACAAGGATCACTG-CAACCGCAAG 27779 Query 94534 TCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAG 94593 ||||| || |||| || || || || || || ||||| |||||| ||||| Sbjct 27778 AGTAACCAAAAGAACCTGGGAACTATTCGCAGTTCCAACCTTTGCACTGAGATTATCGAG 27719 Query 94594 TATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGG 94630 || |||| || ||| | |||||||| ||| ||| Sbjct 27718 TACTGCGCTCCTGATGAGGTCGCTGTGTGCAACTTGG 27682 Score = 123 bits (136), Expect = 2e-23 Identities = 261/383 (68%), Gaps = 6/383 (2%) Strand=Plus/Minus Query 94993 CAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAA 95052 ||||| || ||||||||||| | |||| ||| | ||| | |||| || ||| | Sbjct 27331 CAGGGTATCCTTCAGTTCGACATGTGGGATGTCACCCCCAGTGACCTGTGGGATTGGAAC 27272 Query 95053 GCTCT--ACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCA 95110 || | | | || ||| | || | ||||||| ||| |||||||| |||| |||| Sbjct 27271 TCTTTGAAGGAGCAGATCA-AGCAGA-ACGGTGTTCGCAACTCGCTGCTTCTGGCGCCCA 27214 Query 95111 TGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCT 95170 ||||||| || || || | ||||| || || |||||||||| ||||| || | ||| | Sbjct 27213 TGCCCACTGCGTCAACTTCTCAGATTCTGGGTAACAACGAGTGCTTCGAGCCTTACACTT 27154 Query 95171 CCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCC 95230 | ||| | ||| | | || ||| | || || || |||| || ||||| | | Sbjct 27153 CGAACATTTACCAGCGCCGTGTGTTGGCTGGTGAGTTCCAGGTTGTCAACCCTTGGTTGC 27094 Query 95231 TACGGGA-CCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGC 95289 | || || | || | | || ||| ||||| ||||| | ||||||| | | Sbjct 27093 TTCGCGATCTTGTTGAC-CTTGGTCTGTGGTCGGACAACATGAAGAACCGCATCATTTCG 27035 Query 95290 GCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAG 95349 | |||||| || ||||||||||||| || |||| |||||||||| | || |||||| Sbjct 27034 GACAACGGTTCTATCCAGAACATCCCCAGCATTCCGGCGGACATCAAGTCTCTTTACAAG 26975 Query 95350 ACCGTGTGGGAGATCCCGCAGCG 95372 || || |||||||| | ||||| Sbjct 26974 ACTGTTTGGGAGATTTCTCAGCG 26952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494682744010320