Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6529 123 2e-23 seq6394 111 1e-19 seq6490 102 8e-17 seq6283 102 8e-17 >seq6529 Length=132804 Score = 123 bits (136), Expect = 2e-23 Identities = 346/523 (66%), Gaps = 25/523 (5%) Strand=Plus/Minus Query 47067 ATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACGAAAACGTC 47126 || |||||| | ||| | |||||||| |||||| |||||| |||| || | | ||| Sbjct 77528 ATTCCCTGCATTCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTGCTGACAAGGA-GTC 77470 Query 47127 -ACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAG 47185 ||| | ||| | ||| || | || || ||| || ||||| |||||||||| || Sbjct 77469 GACTTTTGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGC 77410 Query 47186 CTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAA 47245 ||||| | || || | || | || | |||||||| || || || ||| Sbjct 77409 TTTTGCCTCTATCTTCTGGCTGCGCAAGCGTGGTATGATGCCCGGTCTGACTTTCTCCAA 77350 Query 47246 CGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG---TCTCTACTACAA 47302 |||||| ||||| | || || || || ||||| |||||||||| ||| | || | Sbjct 77349 CGAGCTTATCTCTCGTGATGAGGGTCTTCACACGGACTTTGCCTGCCTTCTTTTCTCTCA 77290 Query 47303 C----ACTAGAGTCG-ATCAAA-AGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGA 47356 | || | | | | ||| ||||| | ||| ||||| | | || Sbjct 77289 CCTGAACAACCGCCCCAGCAAGCAGTTGATC-----------CAG-GACATCATCACTGA 77242 Query 47357 AGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAAT 47416 ||||||| |||||||| |||||| | |||||||||| ||| || | | || || Sbjct 77241 TGCCGTCGTCATTGAGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCTCTTCTCGGTAT 77182 Query 47417 GAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCT 47476 |||||| || | |||| | || ||||| || ||||||||||| || || || || Sbjct 77181 GAACGCTGACCTCATGAAGACCTATATCGAGTTCGTCGCCGACCGTCTTCTGGTCGCTCT 77122 Query 47477 AAAGTATC-CCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGC 47535 ||| | |||| | ||| | || || || ||||| |||||| | ||||| || | Sbjct 77121 -CGGTAACGACAAGGTGTACAAGGCCTCCAACCCCTTCGACTTTATGGAGAACATCTCCC 77063 Query 47536 TCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | | || ||||||||||| ||||||||||| || || || || Sbjct 77062 TTGGTGGAAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTA 77020 >seq6394 Length=53086 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| || || || ||| || || ||||| || ||| Sbjct 6360 GTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTCCTCCAGCTGCTTACCA 6419 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | |||||||| || ||||| ||||||||||||||| ||| || |||| Sbjct 6420 GCAAAGATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTG 6479 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||| || | | |||||| || | ||| | || || ||||||||||| Sbjct 6480 ACGTTG-TCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTTCCGGTCAGAGT 6538 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 6539 CTTCACGAAGATCTGCAT 6556 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||||||| | ||||| ||| || ||||| || ||| Sbjct 6816 GTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 6875 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| || || || || |||||||||||| ||| || |||| Sbjct 6876 GCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 6935 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| || | ||| || |||| ||| | || || |||||||| || Sbjct 6936 ACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTAATGGTCTTTCCGGTCAGGGTC 6995 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 6996 TTGACGAAAATCTGCAT 7012 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| ||||| || | || || ||| || ||||| || ||| Sbjct 6588 GTAGACTCCTTCTGAATGTTGTAGTCCGAGAGAGTACGGCCATCCTCAAGCTGCTTACCA 6647 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| ||||| || || || || || |||||||||||| || ||| ||| Sbjct 6648 GCGAAAATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGACTTA 6707 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||| |||| |||||| || | ||| | || || |||||||| || Sbjct 6708 ACATTGTCGATGGTATCCGACGACTCGACCTCAAGGGTAATTGTCTTTCCGGTCAGGGTC 6767 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 6768 TTGACGAAAATCTGCAT 6784 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||||||| | |||||| ||| || ||||| || ||| Sbjct 7272 GTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCA 7331 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||| |||||||| || || || || |||||||||||| ||| || |||| Sbjct 7332 GCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 7391 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | | || | ||| || | ||| || |||| ||| | || |||||||| Sbjct 7392 ACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 7444 >seq6490 Length=90610 Score = 102 bits (112), Expect = 8e-17 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 126950 GTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATG 127009 ||||| ||| || ||||| || |||||| | |||| |||||||| || || || ||| Sbjct 85258 GTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATG 85199 Query 127010 CCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTC 127068 |||||||||||| ||| || ||||| ||||| ||| ||||||| |||||| || Sbjct 85198 CCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT-CGATCGTGTCCGAGGACTCGACCTC 85140 Query 127069 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||| | ||| || || || || || || || ||||||||||| Sbjct 85139 AAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAAATCTGCAT 85095 >seq6283 Length=33863 Score = 102 bits (112), Expect = 8e-17 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || || ||||| ||| || ||||| || ||| Sbjct 31255 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 31196 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| ||||| || || || || || |||||||||||| ||| || |||| Sbjct 31195 GCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTG 31136 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||||| | |||||| || | ||| | || || || ||||| || Sbjct 31135 ACGTTG-TCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTACCCGTCAGGGT 31077 Query 127096 TTTTACAAAA 127105 || || ||| Sbjct 31076 CTTGACGAAA 31067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475461915922080