Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6498 138 1e-27 seq6529 114 2e-20 >seq6498 Length=96284 Score = 138 bits (152), Expect = 1e-27 Identities = 657/1029 (64%), Gaps = 20/1029 (2%) Strand=Plus/Plus Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923 |||||||| |||||||| || | || | | | || ||||| | ||||| ||| Sbjct 27105 TTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTCGAAGTGTAAGGC 27164 Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983 || |||||||| |||||||||| || || | || || || ||||||||||| |||| Sbjct 27165 TCGAAGCACTCGTTGTTACCCAGAATCTGAGAAGTTGACGCAGTGGGCATGGGCGCCAGA 27224 Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA- 116042 || || |||||| | ||| | | | || | ||||| | | || ||| || | Sbjct 27225 AGCAGCGAGTTGCGAACACCGTTCTGCTTGATCTGCTCCTTCAAAGAGTTCCAATCCCAC 27284 Query 116043 -GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCG 116101 | | | || | | | |||||||| || ||||| |||||||| || || | || | Sbjct 27285 AGGTCA-CTGGGGGTGACA-TCCCACATGTCGAACTGAAGGATACCCTGAGAAACAGGAG 27342 Query 116102 ATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGG 116161 ||||||| | ||| || | || ||||| | || | ||| | ||||| |||| Sbjct 27343 ATCCCTCGTACGTCGAGTAAGTACCTTCAACAGCAGCGATATCGCACGAAGCCTCCAGGG 27402 Query 116162 CTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGGAATCA 116220 | ||||| || || |||||||| || | || | || | | ||||| | || ||| Sbjct 27403 CAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAGCTGACGAG-CCTCGGCAGACTCA 27461 Query 116221 AACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGG 116280 || | | ||| | || |||| || ||||| || ||||| | ||||| || Sbjct 27462 AAAGGCATACGAAGGGCCAGGAACGCATCGGCCAGACCCTGAACACCAACACCAATGGGA 27521 Query 116281 CGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACC 116340 || || | ||| ||| || || || | || || || ||| ||| || | Sbjct 27522 CGGTGACGCATGTTACTGTTCCGGGCCTCGACAACAGGGTAGTGGTTCACATCAATGATA 27581 Query 116341 CTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAAC-- 116398 | || | || | |||||||| |||| || || ||||| | | | || | | Sbjct 27582 CGGTTCAAGTTGCGGACAACAACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAG 27641 Query 116399 -TGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAG 116457 || || | ||| ||| | ||| || || | || |||| || ||||||| | Sbjct 27642 TTGTTGGTGTAGTCA---ACAAAGGCAGGGAGAGCAAGCGATGCCAAGTTGCACACAGCG 27698 Query 116458 GTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTG 116517 |||||| | | |||||| ||||| || || || | || ||||| ||| || Sbjct 27699 ACCTCATCAGGAGCGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGAATAGTT 27758 Query 116518 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTC 116577 |||| ||||||||| || ||| ||| || ||||||||| | ||| | || | Sbjct 27759 CCCAGGTTCTTTTGGTTACTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTA 27818 Query 116578 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGT--G 116634 || |||||||| || | | ||||| || | ||| | | || | | || | | || | Sbjct 27819 CCAGTCTCCGTCTGAGCTTCCAGAATGGCATACCACAGCTTCTGAGCCTTG-ATGGTAAG 27877 Query 116635 GCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACA 116694 || | | || || |||| ||||||||| ||| || ||||| || || ||||| | Sbjct 27878 ACG--GCCACGTCCTTCCTGCTCGTACTTGACGTAAAGAGCCTCGAATTCCTCACCGT-A 27934 Query 116695 GCC-TCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTC 116753 || || | | || || || | || || | ||| | ||||| || || ||| Sbjct 27935 GCAATCAGCCAAGCCAGGGCACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCTTCTC 27994 Query 116754 AACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGC 116813 ||| ||||||||||| | ||| |||||||| || || ||| | ||| ||| |||| Sbjct 27995 AACACGCTTCATGAACAAGTCAGGGATCCACAGGGCAAGGAACAAATCGCGAGCGCGAAT 28054 Query 116814 TTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGG 116873 || || | || || || || | || | || || | | ||| ||||||||||| Sbjct 28055 CTCCTCCTTACCGTGGTTCTTCCGAAGGTCAAGGAACTCAAACACATCAGCGTGCCACGG 28114 Query 116874 TTCCAGGTA 116882 |||||||| Sbjct 28115 CTCCAGGTA 28123 >seq6529 Length=132804 Score = 114 bits (126), Expect = 2e-20 Identities = 329/499 (66%), Gaps = 14/499 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || || ||||||||||||||||| ||||| ||| | ||| ||| |||||||| Sbjct 77019 GTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGGGAGATGTTCTCCAT 77078 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 ||| || || ||||| | ||| | || |||| | ||| | | || Sbjct 77079 AAAGTCGAAGGGGTTGGAGGCCTTG---TACACCTTGTCGTTACCGAGAGCGACCAGA-- 77133 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 ||||| || | |||| |||| || || ||| |||| ||||||||||| || Sbjct 77134 AGACGGTCGGCGACGAACTCGATATAGGTCTTCATGAGGTCAGCGTTCATACCGAGAAGA 77193 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 || || || || || | |||| ||||||||||| | || || || | |||| Sbjct 77194 GCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATG 77253 Query 127466 GCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGCAAA 127524 | || || | | | || | ||| | | || ||| || ||||| Sbjct 77254 TCCTGGATCAACTGCTTGCTGGGGCGGTTGT-TCAGGTGAGAGAAAAGAAGGCAGGCAAA 77312 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| |||||||| ||||| ||||| || || || ||||| |||||| ||||| Sbjct 77313 GTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAGACCGGGCAT 77372 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 | ||| ||||| || |||||| || | ||| | |||||||||||||| ||||| Sbjct 77373 CATACCACGCTTGCGCAGCCAGAAGATAGAGGCAAAAGCACCAGAGAAGAAGATACCCTC 77432 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCACT 127703 ||| || || |||| ||||||| |||||| | || | |||| | ||| ||||| Sbjct 77433 AACAGCGGCAAAGGCAACCAGACGCTGGGCAAAAG-TCGACTCCTTGTCAGCAATCCACT 77491 Query 127704 TCATCGCCCACTGTGCCTT 127722 ||| ||||| | ||||| Sbjct 77492 TCAGGGCCCAGTCGGCCTT 77510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613457030448720