Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6498 147 3e-30 seq6529 95.1 2e-14 >seq6498 Length=96284 Score = 147 bits (162), Expect = 3e-30 Identities = 455/683 (67%), Gaps = 16/683 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATG 203896 || ||| || |||||||| || | | || | || |||||| | | ||| |||||||| Sbjct 26756 CTGGTCAACAGTGAACTGGATAG-GAGCAGCAGC-GGCCTGGGTACGCAGGTAGTACATA 26813 Query 203897 CCGGTCTTTAGGCCCTTCTGCCA-CCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 || ||||| || || || ||| |||| | | ||||||| | | |||| || | | Sbjct 26814 CCCGTCTTGAGACCAAGCTTCCAACCCGCAAA-GTGCATGCTGGTAATCTTGCCCATGGT 26872 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTG 204014 ||||| |||||||||||||| ||||| || || || |||||| || || || | Sbjct 26873 TGGGTCCTTCATGTGAATGTTCAACGACTGAGACTGATCAAT-AAAGGCACCACGGTCGG 26931 Query 204015 CGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACAC-GTCTCTG 204073 | ||||| | | || || ||| ||||||||||| || |||||| | | | || || Sbjct 26932 CAGCCATCTGAACAACAGTACGCTGAGAAATCTCCCAAACAGTCTTGTAAAGAGACT-TG 26990 Query 204074 GTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 ||| || | || | || ||| || || |||||||| | || | | | Sbjct 26991 ATGTCCGCCGGAATG-CTGGGGATGTTCTGGATAGAACCGTTGTCCGAAATGATGCGGTT 27049 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCA-GCTCCCGCACCAGGTGGGGGTTGA 204191 | || | | ||| ||||| | |||| | | || | || || | || ||||||| Sbjct 27050 CTTCATGTTGTCCGACCACA-GACCAAGGTCAACAAGATCGCGAAGCAACCAAGGGTTGA 27108 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 | ||| || || || | || ||| | || | | | ||| ||| | || |||| Sbjct 27109 CAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTCGAAGTGTAAGGCTCGA 27168 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | ||||||||| || | |||||||| || || ||||||||||| ||||| |||| Sbjct 27169 AGCACTCGTTGTTACCCAGAATCTGAGAAGTTGACGCAGTGGGCATGGGCGCCAGAAGCA 27228 Query 204312 GGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGTCGTGCATC 204370 | |||||||| ||||||| | | || |||| ||||| |||| |||| || || Sbjct 27229 GCGAGTTGCGAACACCGTTCTGCTTGA-TCTGCTCCTTCAAAGAGTTCCAATCCCACAGG 27287 Query 204371 GCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCC 204430 ||||||| | || |||||||||||||||||| ||| || ||| || || ||| Sbjct 27288 TCACTGGGGGTGACATCCCACATGTCGAACTGAAGGATACCCTGAGAAACAGGAGATCCC 27347 Query 204431 TTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGA 204490 | |||||||| |||| || | | || | | |||||| || ||| ||| Sbjct 27348 TCGTACGTCGAGTAAGTACCTTCAACAGCAGCGATATCGCACGAAGCCTCCAGGGCAGCG 27407 Query 204491 TAGTACATGGTCTCAAAGATCTG 204513 | ||| ||||||||||||||||| Sbjct 27408 TGGTAAATGGTCTCAAAGATCTG 27430 >seq6529 Length=132804 Score = 95.1 bits (104), Expect = 2e-14 Identities = 317/488 (65%), Gaps = 19/488 (4%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||||||||| || | | ||| || ||||| || |||| ||||| Sbjct 77034 CTTCTCGAAGAAGTTGGTCTTTCCACCAAGGGAGATGTTCTCCATAAAGTCGAAGGGGTT 77093 Query 159709 CTTCACGTGATAGCGCTT--CGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAAT 159766 | | || ||| || | |||||||| |||| | | ||| || || || Sbjct 77094 GGAGGCCTTGTACACCTTGTCGTTA--CCGAGAGCGACCAGAAGACGGTCGGCGACGAAC 77151 Query 159767 TCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCC 159826 ||||| ||| | ||| | ||| ||| || || || || ||| || || || Sbjct 77152 TCGATATAGGTCTTCATGAGGTCAGCGTTCATACCGAGAAGAGCGCAGGGAAGAGCCTCG 77211 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGA-CACGTTCGTA 159885 | || |||||||||||||| |||| || || || | || | | || || | | | Sbjct 77212 GTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATGTCCTGGATCAACTGCTTG 77271 Query 159886 CCCCGGC--TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGT 159943 | ||| ||| || ||| || || ||||| |||||||| ||| || Sbjct 77272 CTGGGGCGGTTGTTCA------GGTGAGAGAAAAGAAGGCAGGCAAAGTCCGTGTGAAGA 77325 Query 159944 CCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGT 160003 ||||| || |||||||| | ||||||||| | | || || ||||| || |||||| Sbjct 77326 CCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAGACCGGGCATCATACCACGC--- 77382 Query 160004 TTG---AGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCA 160060 ||| ||||| || || | ||||||||||| || ||||| ||||| || || ||| Sbjct 77383 TTGCGCAGCCAGAAGATAGAGGCAAAAGCACCAGAGAAGAAGATACCCTCAACAGCGGCA 77442 Query 160061 AACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120 || || || || | || |||||| | | ||||| ||||| | |||||| Sbjct 77443 AAGGCAACCAGACGCTGGGCAAAAGTCGACTCCTTGTCAGCAATCCACTTCAGGGCCCAG 77502 Query 160121 TCAGCCTT 160128 || ||||| Sbjct 77503 TCGGCCTT 77510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795090176183520