Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6394 141 2e-28 seq6283 138 3e-27 seq6490 114 3e-20 >seq6394 Length=53086 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||||||||| |||||||| |||| ||||||||| | | || Sbjct 7020 CGAAGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTA 7079 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || || ||||| |||||||||||||||||| || || Sbjct 7080 CGGCCGTCCTCCAGCTGCTTACCCGCAAAGATAAGACGCTGCTGGTCCGGAGGGATACCC 7139 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| |||||| | | || || || | Sbjct 7140 TCCTTATCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCAAGA 7199 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || ||||| || || Sbjct 7200 GTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTG 7237 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || |||||||| || |||||||| |||| ||||||||||| || || Sbjct 6336 CGAAGACGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTA 6395 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || || ||||| |||||||||||||||||| || || Sbjct 6396 CGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGAGGGATGCCC 6455 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| || | ||| || | | || || || | Sbjct 6456 TCCTTGTCCTGGATCTTGCTCTTGACGTTGTCAATGGTATCAGAAGACTCGACCTCAAGG 6515 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| ||||| || || || Sbjct 6516 GTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTG 6553 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || || |||||||| || | ||||||||| | | ||| | ||||| Sbjct 6573 AGAACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGAGTACGGCCATCC 6632 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || ||||| || || ||||| |||||||| ||| || || ||| Sbjct 6633 TCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCC 6692 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || |||| ||| || | | || || || | || || ||| Sbjct 6693 TGAATCTTCGACTTAACATTGTCGATGGTATCCGACGACTCGACCTCAAGGGTAATTGTC 6752 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || ||||| || Sbjct 6753 TTTCCGGTCAGGGTCTTGACGAAAATCTG 6781 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||||||||| |||||||| |||| |||||| || | | || Sbjct 6792 CGAAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTG 6851 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || ||||| || || |||||||||||||| || || Sbjct 6852 CGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCC 6911 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || || | ||| || | | || || || | Sbjct 6912 TCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAACCTCGAGG 6971 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || ||||| || Sbjct 6972 GTAATGGTCTTTCCGGTCAGGGTCTTGACGAAAATCTG 7009 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||||||||| |||||||| |||| |||||| || | | || Sbjct 7248 CGAAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTG 7307 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || ||||| || || |||||||||||||| || || Sbjct 7308 CGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCC 7367 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || || | ||| || | | || || || | Sbjct 7368 TCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAACCTCGAGG 7427 Query 199589 GTGATCGTCTTACCCGTGA 199607 ||||| ||||| || |||| Sbjct 7428 GTGATGGTCTTGCCGGTGA 7446 >seq6283 Length=33863 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||||||||| |||||||| |||| ||||||||| | || || | ||||| Sbjct 31270 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 31211 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| || ||||| |||||||| ||| || || ||| Sbjct 31210 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCC 31151 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| ||| Sbjct 31150 TGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTC 31091 Query 199598 TTACCCGTGAGAGTTTTCACAAAA 199621 |||||||| || || || || ||| Sbjct 31090 TTACCCGTCAGGGTCTTGACGAAA 31067 >seq6490 Length=90610 Score = 114 bits (126), Expect = 3e-20 Identities = 148/202 (73%), Gaps = 3/202 (1%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACT--CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCT 199484 ||| |||| |||| |||| |||| ||||||||||| | || | ||||| ||||||| Sbjct 85298 TGGGGAGT-GACTAACCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCT 85240 Query 199485 GCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCT 199544 |||| || ||||| || || |||||||||||||| ||| || || ||||| |||| Sbjct 85239 GCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCT 85180 Query 199545 TTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | ||| ||| |||| ||||| | | || || || | |||||||||||||||| Sbjct 85179 TGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATCGTCTTACCCG 85120 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 | || || || || ||||| || Sbjct 85119 TAAGGGTCTTAACGAAAATCTG 85098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178822783528314