Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq6490 123 3e-23 seq6394 113 5e-20 seq6283 113 5e-20 >seq6490 Length=90610 Score = 123 bits (136), Expect = 3e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| |||||||| || || ||||| | || || ||||||||||| ||||| | Sbjct 85284 CCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAA 85225 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | || | || |||||||||| |||||| ||||| ||| | Sbjct 85224 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 85166 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| || || || || | ||||| || || ||||| || || ||||| Sbjct 85165 TCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACG 85106 Query 46583 AAGATTTGCATTTTG 46597 || || ||||| ||| Sbjct 85105 AAAATCTGCATCTTG 85091 >seq6394 Length=53086 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || ||||| | || |||||||||||||| ||||| Sbjct 6821 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 6880 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | | |||||||||| |||||| ||||| | Sbjct 6881 AATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATT 6940 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || ||| || || || || | || ||||| || || ||||| || || || Sbjct 6941 GTCAATGGTATCGGAGGACTCAACCTCGAGGGTAATGGTCTTTCCGGTCAGGGTCTTGAC 7000 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 7001 GAAAATCTGCAT 7012 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || || || |||| || |||||||| || || || Sbjct 7049 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCCAGCTGCTTACCCGCAAA 7108 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | |||||| ||| |||||| ||||| ||| Sbjct 7109 GATAAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGAATCTTCGACTTGA-CGT 7167 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || || || || | |||||||| ||||| ||||| || || | Sbjct 7168 TGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGTCTTGCCAGTCAGAGTCTTGA 7227 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 7228 CAAAGATCTGCAT 7240 Score = 105 bits (116), Expect = 8e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| |||||||| || || || || |||| || Sbjct 6348 ACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTCCTCC 6407 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || || | ||||||||||| | || | || |||||||||| | Sbjct 6408 AGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 6467 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||||| ||| | | | || || || || || || | || ||||| || Sbjct 6468 ATCTTGCTCTTGA-CGTTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTT 6526 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || ||||| ||||| Sbjct 6527 TCCGGTCAGAGTCTTCACGAAGATCTGCAT 6556 Score = 100 bits (110), Expect = 3e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || ||||| | || || ||||||||||| ||||| Sbjct 7277 CTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAA 7336 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | | |||||||||| |||||| ||||| | Sbjct 7337 AATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATT 7396 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | || ||| || || || || | |||||||| ||||| || Sbjct 7397 GTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 7444 >seq6283 Length=33863 Score = 113 bits (124), Expect = 5e-20 Identities = 137/184 (74%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| | || || ||||||||||| ||||| Sbjct 31250 CTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 31191 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||| ||||| | || | | |||||||||| |||||| ||||| ||| Sbjct 31190 GATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 31132 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || || || |||| |||||||| || |||||||| || || | Sbjct 31131 TGTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGA 31072 Query 46581 CAAA 46584 | || Sbjct 31071 CGAA 31068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565192177629840