Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq6529 217 1e-51 seq6490 118 1e-21 seq6283 116 4e-21 seq6394 107 2e-18 >seq6529 Length=132804 Score = 217 bits (240), Expect = 1e-51 Identities = 580/878 (66%), Gaps = 15/878 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || ||||| | | ||| ||| | |||||| || ||||||||| Sbjct 77035 TTCTCGAAGAAGTTGGTCTTTCCACCAAGGGAGATGTTCTCCATAAAGTCGAAGGGGTTG 77094 Query 132685 GCTGTGTTGTAGTGCTTGGTG---CCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||||| |||| | |||| || |||| || || | |||||| |||||| Sbjct 77095 GAGGCCTTGTACACCTTGTCGTTACCGAG-AG--CGACCAGAAGACGGTCGGCGACGAAC 77151 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800 ||||| || | |||| || || | || || ||| |||| || || || || Sbjct 77152 TCGATATAGGTCTTCATGAGGTCAGCGTTCATACCGAGAAGAGCGCAG-GGAAGAGCCTC 77210 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 ||| || || | ||| ||| |||| || || |||| ||| ||| | | | Sbjct 77211 GGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATGTCCTGGATCAACTGCTT 77270 Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 ||| || || | || || ||| | | ||| |||||||| || | ||||| Sbjct 77271 GCTGGGGCGGTTGTTCAGGTGAGAGAAAAGAAGGCAGGCAAAGTCCGTGTGAAGACCCTC 77330 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 || | || || || |||||| |||||||| |||||||| | || || || || Sbjct 77331 ATCACGAGAGATAAGCTCGTTGGAGAAAGTCAGACCGGGCATCATACCACGCTTGCGCAG 77390 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || || | ||| ||| || || ||||||| ||||| || || || || || || Sbjct 77391 CCAGAAGATAGAGGCAAAAGCACCAGAGAAGAAGATACCCTCAACAGCGGCAAAGGCAAC 77450 Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 ||| |||| | | || || | || ||| || ||||| ||| ||||| |||||||| Sbjct 77451 CAGACGCTGGGCAAAAGTCGACTCCTTGTCAGCAATCCACTTCAGGGCCCAGTCGGCCTT 77510 Query 133101 TTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGA 133160 | ||| || || || || |||||||| || | | | | | || ||| Sbjct 77511 GCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGAG--GTATGTGCGCTGAGCAGGC 77568 Query 133161 ACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCG 133218 | | ||||||||| || || || || | |||||||| | ||||||||| | Sbjct 77569 TCCTTGATGTAGGTGTCAATCAGCAAAGAGTAGGTCTCCGAGTGGATGTTCTCCATCATG 77628 Query 133219 ATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCG 133278 || || || ||||| ||||| || || ||| | ||| || || || |||||||||| Sbjct 77629 ATCTGGAAACCGTAGAAGCAACGGGCTTCGGGGATCTGGACCTCAGCAGAGAAACGCTCG 77688 Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 |||| || |||||||| || ||||| |||||||| ||||| || ||||| |||| Sbjct 77689 ACCAAGTTCTCGTTGACAATACCGTCAGAAGCGGCGAAGAAGGCAAGAACGTGAGAGATG 77748 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395 || |||| | | ||| ||| | ||||||| | |||||||| ||||| Sbjct 77749 AAGAACTGCTCATCCTTTGTCATGCGGTTGTTCCAGTCGTGAAGATCCTTGGAAAGGTCA 77808 Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAA 133455 | ||||||| ||||||| || || |||||||| || |||||||| ||| || || Sbjct 77809 ATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCAGATCTCGTGG 77868 Query 133456 TATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 || | || || || | ||| || ||| ||||||||| Sbjct 77869 TACTTGATAGGGAAGAGCACGAAACGGTTGGGGTTTTC 77906 >seq6490 Length=90610 Score = 118 bits (130), Expect = 1e-21 Identities = 144/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || ||||| || || |||||| | || |||||| || Sbjct 85092 AAGATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCC 85151 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | |||| | || || |||| ||||| ||||| |||||| | || Sbjct 85152 TCGGACACGATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGA 85210 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || |||| ||| ||||| |||||||| || | |||||||| ||||| Sbjct 85211 CCAGCAGCGCCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTA 85270 Query 38420 CAACATCCAAAAGG 38433 ||||||||| |||| Sbjct 85271 CAACATCCAGAAGG 85284 >seq6283 Length=33863 Score = 116 bits (128), Expect = 4e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || ||||| || ||||||||| | || |||||| | | |||| | | Sbjct 31068 TTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCTTCGGACACCATC 31127 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || || |||| ||||| ||||| |||||| | ||||||||||| || Sbjct 31128 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAACAGCGCCT 31186 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| ||||| ||||| || || | |||||||| |||||||||||||| || Sbjct 31187 GATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAA 31246 Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| | || || || |||| || ||| Sbjct 31247 GGAGTCCACTCTCCACCTGGTCCTCCGT 31274 >seq6394 Length=53086 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAG 38325 |||| ||||| ||||||||| |||| || ||| || |||| | | | | | | || Sbjct 7446 TCACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGATACCATTGACAATGTCAAGT 7387 Query 38326 AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || |||| ||||| ||||| || ||| | ||||| ||||| || |||| ||| |||| Sbjct 7386 CCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCTGATTTTCGCTGGCA 7327 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 | ||||| || || | ||||||||| ||| ||||||||||| ||||| Sbjct 7326 AGCAGCTTGAGGATGGTCGCACCCTCTCCGATTACAACATCCAGAAGGA 7278 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||| ||| |||| || ||| || || Sbjct 7012 ATGCAGATTTTCGTCAAGACCCTGACCGGAAAGACCATTACCCTCGAGGTTGAGTCCTCC 6953 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || |||| ||||| ||||| || ||| | ||||| Sbjct 6952 GATACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 6893 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| ||||| || || | |||||||| ||| |||||| Sbjct 6892 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGATTACAAC 6833 Query 38424 ATCCAAAAGGA 38434 ||||| ||||| Sbjct 6832 ATCCAGAAGGA 6822 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||| ||| | || |||||| | | Sbjct 6556 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATTACCCTTGAGGTCGAGTCTTCT 6497 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| | |||| || |||| ||||| ||||| || || | |||| Sbjct 6496 GATACCATTGACAACG--TCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACC 6439 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || || || |||||||| |||| || ||||| ||||||| Sbjct 6438 AGCAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGTACCCTGTCTGACTACA 6379 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||| ||||| | || || || |||| || ||| | | || |||| Sbjct 6378 ACATCCAGAAGGAGTCTACCCTCCACCTGGTTCTCCGTCTTCGTGGTGGCC 6328 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| | || || ||| || | Sbjct 7240 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCT 7181 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || || | || || ||||| || || | ||||| Sbjct 7180 GACACCATCGACAACG-TCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCGGACCA 7122 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||||| || |||||||| |||| || ||||| ||||||||| Sbjct 7121 GCAGCGTCTTATCTTTGCGGGTAAGCAGCTGGAGGACGGCCGTACCCTTTCCGACTACAA 7062 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 7061 CATCCAGAAGGA 7050 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || || ||| | || |||||| | | Sbjct 6784 ATGCAGATTTTCGTCAAGACCCTGACCGGAAAGACAATTACCCTTGAGGTCGAGTCGTCG 6725 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| || || | ||||| ||||| |||||| | |||||| Sbjct 6724 GATACCATCGACAATGTTAAGTCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAA 6665 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| || || ||||| || || | || || ||| ||||||||| Sbjct 6664 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACTCTCTCGGACTACAAC 6605 Query 38424 ATCCAAAAGGA 38434 || || ||||| Sbjct 6604 ATTCAGAAGGA 6594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500131898369280