Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq6401 199 5e-46 seq6194 181 1e-40 seq6519 87.8 2e-12 seq6498 86.0 8e-12 >seq6401 Length=54557 Score = 199 bits (220), Expect = 5e-46 Identities = 490/738 (66%), Gaps = 15/738 (2%) Strand=Plus/Plus Query 7026 CGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTT 7085 |||| ||||| | || ||||| ||||| |||||||||||||| || | || | || | Sbjct 2180 CGGCCTGGACGGCGGCACCGTAGGCGACGGCCTCATCGGGGTTGATAGACTTCTCAAGCT 2239 Query 7086 CTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCAC 7145 || ||||| || | ||||| | | | || || || ||||| || || || |||| Sbjct 2240 TCTTGCCGTTGAAGAACTCCGAAAGGAGCTTCTGGATCTTGGGGATACGGGTAGAACCAC 2299 Query 7146 CGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTT 7205 ||||||| ||||| || | || | || || | | ||||| || Sbjct 2300 CGACCAAGACGATCTCGTCAACCTGGGACTTGTTCAGGCCAGAGTCCTTGAGGACAGAGG 2359 Query 7206 CGACAGGTTCCATACATTTACGGAACAAGTCCATACA---CAGTTCCTCAAAACGTGCAC 7262 | || || |||| | | ||| | || | | ||| ||||| ||||| |||| Sbjct 2360 CAACGGGCTCCAGAGTGCCAGCGAA---GGCCTTGGAGTTCAGCTCCTCGAAACGGGCAC 2416 Query 7263 GGGTAAT--GGATG-TATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTG 7319 |||| || ||| | | ||| ||| |||||| | | | ||||| |||||||| | Sbjct 2417 GGGTGATCTGGACGGTGTAGTCCTCA---CCGTCGAAGAGAGTGTCAATCTCAATGGTGG 2473 Query 7320 TTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAA 7379 | || || ||||| | || ||||| || ||||| || || || || | |||||| | Sbjct 2474 TCTGGGCACCGGAAGAAAGGGTACGCTTGGCACGCTCGCAAGCAGTCCGGAGACGACGGA 2533 Query 7380 GGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT 7439 | ||||| | | |||||||| ||| ||||| || || | || || | | ||| Sbjct 2534 GAGCACGGGCATCACCGGAAAGATCCTTCTTGGTCTTGCGGGTGAAGTCCTTCTTGCAGT 2593 Query 7440 GTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTT 7499 | ||| || | | |||||||| | |||||| | ||| || || || ||||| || | Sbjct 2594 GCTCAAGAAGGTTGGTGTCGAAATCCTGACCACCAAGGTGAGTGTCACCAGCGGTAGCCT 2653 Query 7500 TGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCA 7559 |||| | |||| ||| || | ||||| | || || ||||| || ||||||||||||| Sbjct 2654 TGACAGCGAAGACACCACCCTGGATGTTCAGCAGGGAGACATCGAAAGTACCACCACCCA 2713 Query 7560 GGTCAAAAATGAGTACGTTCGTATCGTCGTCT---TTGTTCTTATCGAGACCGTACGCGA 7616 | || | || || ||||| || | ||| ||| | | |||||||| |||| Sbjct 2714 GATCGTAGATCAGGACGTTGCGCTCCTTGTCGGACTTGCCGGCACCCAGACCGTAAGCGA 2773 Query 7617 TAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCG 7676 |||| || || || || || || || ||||| || ||| ||||||||||| | | | Sbjct 2774 TAGCGGCAGCGGTGGGCTCGTTGATGATACGGAGGACGTTAAGGCCAGCAATGGCACCGG 2833 Query 7677 CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 |||| || || || || || || ||||| |||||||| ||||| || | ||| || | Sbjct 2834 CATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTAATGACAGCCT 2893 Query 7737 CCGTGACTTTCTTACCGA 7754 | ||| ||||| |||| Sbjct 2894 TCTCGACCTTCTTGCCGA 2911 >seq6194 Length=25842 Score = 181 bits (200), Expect = 1e-40 Identities = 279/398 (70%), Gaps = 0/398 (0%) Strand=Plus/Minus Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 ||||||||||| | ||| || || || || || | ||||| || |||||||| | ||| Sbjct 17637 TCTTCACCACCAAGGTGAGTGTCACCAGCAGTGGACTTGACCTCGAAGATACCATCCTCA 17578 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | | |||||||| || ||||||||||| || || || || || ||||| Sbjct 17577 ATGGTAAGGAGGGAAACATCGAAAGTACCACCACCAAGATCGAAGATCAGGACGTTGCGC 17518 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 || |||| ||||| || |||||||| ||||| || || || || || || || || Sbjct 17517 TCACCGTCGACCTTCTTGTCAAGACCGTAGGCGATGGCAGCAGCAGTAGGCTCGTTGATG 17458 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 ||||| ||| ||| || |||||||| | ||||| || || || || || || || Sbjct 17457 ATACGGAGAACGTTAAGACCAGCAATCAAACCAGCATCCTTGGTAGCCTGACGCTGAGAG 17398 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| |||||||| ||||| || ||||| || | |||| | ||||||| || || Sbjct 17397 TCGTTGAAGTAGGCGGGGACAGTGACGACGGCCTGGTTGACAGTGGTACCGAGGTAGGAC 17338 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | || ||| ||| | || ||||| || || ||||| |||| | || Sbjct 17337 TCAGCAGTCTCACGCATCTTGATCAGGACCATGGAGGAGATCTCCTCAGGAGTGAAGGTC 17278 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 || || ||||| || || ||||| || || | ||| || Sbjct 17277 TTGGTCTCACCCTTGAACTCAACCTCGATGACGGGCTT 17240 >seq6519 Length=116256 Score = 87.8 bits (96), Expect = 2e-12 Identities = 196/289 (68%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 184051 AAGTCCCTTGATATGACTTCCATCGTTATCTGCATCGGTCATGATCATGAGTCTTCCGTA 184110 ||| ||||||||||| ||||||| ||| ||||| ||||||||| || || || Sbjct 61287 AAGACCCTTGATATGCGAACCATCGTGATCCTGATCGGCCATGATCATCAGATGACCATA 61228 Query 184111 TCTGAGT-TCGGAGAGTGATGTATACACTTTCCCTTGCTGAAGCCCCAAAATCTTTTTAA 184169 | ||| || | | |||||| ||| || |||| || ||||| | || ||| | Sbjct 61227 ACGAAGTGTCTTGGTATC-TGTATAAACTGTCTTGTGCTTGAGACCCAAGAACTGTTTGA 61169 Query 184170 GATCATTAAACTCCTTGTTTTCGGTAAGTTGTTTTACACTCGCGTCACGCACGTTCTTAC 184229 || | || || | ||| | ||||| ||| | | | || ||||| || ||| || Sbjct 61168 TATTTTGAATTTCTTGGTTCTTGGTAATTTGGTCCAAAGAAGCATCACGGACATTCA-AC 61110 Query 184230 AT-TTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCA 184288 || ||||| | ||| || |||||||| | | ||| || | | || | | |||||||| Sbjct 61109 ATCTTACCACGAAGTGGGAAAACACCAATACGGTCAGGATCCAAAATGGCACGACCAGCA 61050 Query 184289 ATTGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGTACACT 184337 | || | | || || || ||||||||||| | ||| |||||||||| Sbjct 61049 ACGGCCAAAGACTTGGCCGAGTCACCTTCGGTCAAAATCAGAGTACACT 61001 >seq6498 Length=96284 Score = 86.0 bits (94), Expect = 8e-12 Identities = 335/522 (64%), Gaps = 15/522 (3%) Strand=Plus/Plus Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618 ||||| || ||||||||||| || || ||||||| ||| || | || ||| | Sbjct 27993 TCAACACGCTTCATGAACAAGTCAGGGATCCACAGGGCAAGGAACAAATCGCGAGCGCGA 28052 Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678 ||| || | ||| || ||| |||| || || || || | | ||| |||||||| Sbjct 28053 ATCTCCTCCTTACCGTGGTTCTTCCGAAGGTCAAGGAACTCAAACACATCAGCGTGCCAC 28112 Query 105679 GGTTCTAAATAGACTGCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATAT 105732 || || | || | |||| || || | ||||| || | |||| ||| || Sbjct 28113 GGCTCCAGGTAAATGGCAAAAGCACC---AGGACGCTTGTTGCCACCCTGATCGACGTAA 28169 Query 105733 CTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTT 105792 | || || ||| |||| || | ||| |||| |||||| | || || || || || Sbjct 28170 CGGGCAGTGTTGTTGAACACACGCAGCATAGGAACAATACCGTTCGAGGTACCGTTAGTG 28229 Query 105793 CCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCC 105852 || ||| | || | | ||||| | | |||||||| | || ||||| || ||| Sbjct 28230 CCGGCAATGTAGGAACCAGTAGCACGGATACGGTGAACGTTGAGACCGATACCACCCGCC 28289 Query 105853 CACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCC 105912 ||| ||| ||||| || | ||||| || ||||| |||||||| || ||| Sbjct 28290 ATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTCGATACTGTCCTCC 28349 Query 105913 TTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTG-GGTGTACCAGCATTGAACAG 105971 || | | | || ||| || || || | || || ||| || ||||| || ||||| || Sbjct 28350 TTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGG-CTGAGGGGTACCGGCGTTGAAGAG 28408 Query 105972 AGTTGGTGTTGCATGAATGAACAAACCTT--TCGATAACGCTTCGTATGTTTCCAGGACG 106029 || || | || ||| |||| || ||| |||| | | ||| |||||||| || Sbjct 28409 GGTAGGAGAGGCGTGAGTGAAGAA--CTTGCTCGACATGAGGTTGTAAGTTTCCAGAACA 28466 Query 106030 TGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCATA 106071 | |||| || | || ||||| | ||| || |||||| Sbjct 28467 CGCTCAACATTATCACCCCAGATACCGACAGCAACACGCATA 28508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635080862015280