Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6498 196 6e-45 seq6529 129 7e-25 >seq6498 Length=96284 Score = 196 bits (216), Expect = 6e-45 Identities = 894/1399 (64%), Gaps = 43/1399 (3%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| || || |||||||| || || || |||| |||| Sbjct 28522 CCTCAGCACATGATTATGCGTGTTGCTGTCGGTATCTGGGGTGATAATGTTGAGCGTGTT 28463 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 |||| || ||| || ||||| | | |||| ||||| | || ||||||||| Sbjct 28462 CTGGAAACTTACAACCTCATGTCGAGCAAGTTCTTCACTCACGCCTCTCCTACCCTCTTC 28403 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| ||||| || || || | || || ||| | | | | |||||||| Sbjct 28402 AACGCCGGTACCCCTCAGCCTCAGCTTTCTTCCTGCTTCTTGGTAGACATGAAGGAGGAC 28343 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 ||| | || || || | || |||| ||||| ||||| ||| ||| ||| Sbjct 28342 AGTATCGAAGGTATCTATGATACCCTCAAGACCTGTGCTATGATCTCCAAGATGGCGGGT 28283 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACAA 111909 |||||||| | || | || | || | || | | || || || || || || | Sbjct 28282 GGTATCGGTCTCAACGTTCACCGTATCCGTGCTA-CTGGT-TCCTACATTGCCGGCACTA 28225 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | ||| || | |||||| |||| ||||| || || || ||| ||| || || || | Sbjct 28224 ACGGTACCTCGAACGGTATTGTTCCTATGCTGCGTGTGTTCAACAACACTGCCCGTTACG 28165 Query 111970 TAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | | || | ||| ||||| || || | || | || || ||||| |||| Sbjct 28164 TCGATCAGGGTGGCAACAAGCGTCCT---GGTGCTTTTGCCATTTACCTGGAGCCGTGGC 28108 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCG 112081 |||| ||| | | ||||||||||| | || ||||| ||| | |||||| |||| Sbjct 28107 ACGCTGATGTGTTTGAGTTCCTTGACCTTCGGAAGAACCACGGTAAGGAGGAGATTCGCG 28048 Query 112082 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 | |||||| | ||| || || ||||| || || | ||||||||| | |||||| | Sbjct 28047 CT--CGCGATTTGTTCCTTGCCCTGTGGATCCCTGACTTGTTCATGAAGCGTGTTGAGAA 27990 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 || ||| | ||| | ||| | || || || || || || | | ||| | || Sbjct 27989 GAACGGCGAATGGACCCTCATGTGCCCCAACGAGTGCCCTGGCTTGGCTGATTGCTACGG 27930 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGG--CGACTGCGACG 112259 |||||| || || || || ||| ||||||||| | ||| | || | || || || Sbjct 27929 TGAGGAATTCGAGGCTCTTTACGTCAAGTACGAGCAGGAAGGACGTGGCCGTCTT--ACC 27872 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 | ||| | || | ||||| | || ||||| | |||| || |||||||||| || Sbjct 27871 ATCAAGGCT-CAGAAGCTGTGGTATGCCATTCTGGAAGCTCAGACGGAGACTGGTAACCC 27813 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | ||| | ||||| || ||| |||| |||||||| |||||||| |||| || Sbjct 27812 TTTCATGTTGTACAAGGATCACTGCAACCGCAAGAGTAACCAAAAGAACCTGGGAACTAT 27753 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 ||||||||||| || || || || | || | | |||||| ||||| Sbjct 27752 TCGCAGTTCCAACCTTTGCACTGAGATTATCGAGTACTGCGCTCCTGATGAGGTCGCTGT 27693 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 112497 ||| ||| | ||||| | |||||||| | ||| || | || |||| | | | Sbjct 27692 GTGCAACTTGGCATCGCTTGCTCTCCCTGCCTTTGTTGACTACACCAACAACTGC-TACG 27634 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | | || || ||||| || || || ||| ||| | ||| | | |||| Sbjct 27633 ACTTCCAGAAGCTGCACGATGTCACCAAGGTTGTTGTCCGCAACTTGAACCGTATCATTG 27574 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 || || ||||| |||| || || || ||| ||| | |||||||| |||| Sbjct 27573 ATGTGAACCACTACCCTGTTGTCGAGGCCCGGAACAGTAACATGCGTCACCGTCCCATTG 27514 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATT 112674 || | ||||| || ||||| || |||| ||| | ||| || | | ||||| | Sbjct 27513 GTGTTGGTGTTCAGGGTCTGGCCGATGCGTTCCTGGCCCTTCGTATGC---CTTTTGAGT 27457 Query 112675 CCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTG 112734 | | ||| || | |||| || || |||||||| || || ||||| || || | Sbjct 27456 CTGCCGAGGCTCGTCAGCTCAACAAGCAGATCTTTGAGACCATTTACCACGCTGCCCTGG 27397 Query 112735 AGGCGAGTTCG---GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791 |||| |||| || | || | ||||| ||| | || || | ||||| |||| Sbjct 27396 AGGC---TTCGTGCGATATCGCTGCTGTTGAAGGTACTTACTCGACGTACGAGGGATCTC 27340 Query 112792 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCAC---T 112848 | | ||| || || | ||||| || || ||||||| | || | || || | || | Sbjct 27339 CTGTTTCTCAGGGTATCCTTCAGTTCGACATGTGGG-ATGTCACCCCCAG--TGACCTGT 27283 Query 112849 ACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 112908 || ||| || || | ||||| | |||||| |||| ||| |||| ||| || | Sbjct 27282 GGGATTGGAACTCTTTGAAGGAGCAGATCAAGCAGAACGGTGTTCGCAACTCGCTGCTTC 27223 Query 112909 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 112968 |||| || ||||| || || || || | || || ||||||| || || ||||| || | Sbjct 27222 TGGCGCCCATGCCCACTGCGTCAACTTCTCAGATTCTGGGTAACAACGAGTGCTTCGAGC 27163 Query 112969 CCTACACGACGAACATCTA 112987 | ||||| ||||||| || Sbjct 27162 CTTACACTTCGAACATTTA 27144 >seq6529 Length=132804 Score = 129 bits (142), Expect = 7e-25 Identities = 212/303 (70%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 102032 GGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCT 102091 |||||| ||| | || || |||| || || ||||| |||| || | | || Sbjct 77607 GGAGACCTACTCTTTGCTGATTGACACCTACATCAAGGAGCCTGCTCAGCGCACATACCT 77548 Query 102092 CTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTG 102151 ||| | ||||| | || |||| || |||| || || || ||||| ||||||| Sbjct 77547 CTTCAACGCCATTGACACTATTCCCTGCATTCGCCGCAAGGCCGACTGGGCCCTGAAGTG 77488 Query 102152 GTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 102208 | ||| | |||| ||||| || |||| |||| || | || ||||| |||||| Sbjct 77487 GATTGCTGACAAGGAGTCGACTT---TTGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGA 77431 Query 102209 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 102268 ||||||||||||||||||| | || | |||| | ||||| ||||| ||| | || Sbjct 77430 GGGTATCTTCTTCTCTGGTGCTTTTGCCTCTATCTTCTGGCTGCGCAAGCGTGGTATGAT 77371 Query 102269 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 102328 ||| ||||| |||||||||||||||||||||||||| ||||| || ||| || || Sbjct 77370 GCCCGGTCTGACTTTCTCCAACGAGCTTATCTCTCGTGATGAGGGTCTTCACACGGACTT 77311 Query 102329 TGC 102331 ||| Sbjct 77310 TGC 77308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620691638790240