Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6498 262 5e-65 seq6529 122 1e-22 >seq6498 Length=96284 Score = 262 bits (290), Expect = 5e-65 Identities = 1111/1726 (64%), Gaps = 53/1726 (3%) Strand=Plus/Plus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| ||||||||||||||| || || |||||| || || ||||| | || | ||| Sbjct 26891 GTTCAACGACTGAGACTGATCAATAAAGGCACCACGGTCGGCAGCCATCT-GAACA-ACA 26948 Query 109560 CTTT--TGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCC 109617 | || ||| ||||| ||||||||||| | | |||||| || | |||||| Sbjct 26949 GTACGCTGAGAAATCTCCCAAACAGTCTTGTAAAGAGACTTGATGTCCGCCGGAATGCTG 27008 Query 109618 ACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAG 109677 |||||| || ||||| || || | ||| | | |||||| | | |||||| Sbjct 27009 GGGATGTTCTGGATAGAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTGTCCGACCAC 27068 Query 109678 AGACCGACCTTTTTGAGATCGTCAA-CAAG-ATGCTTGTTGACCACGACAAATTCACCAG 109735 ||||| | | |||||| || ||| | | |||||| || || ||||||| Sbjct 27069 AGACCAAGGTCAACAAGATCGCGAAGCAACCAAGG--GTTGACAACCTGGAACTCACCAG 27126 Query 109736 CAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTA 109795 | | || || |||| ||||| | ||||| || ||||| ||||| ||||| || | Sbjct 27127 CCAACACACGGCGCTGGTAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCA 27186 Query 109796 GGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCT 109855 | || || | ||| || || ||||||||||| |||| || || ||| || | ||| | Sbjct 27187 GAATCTGAGAAGTTGACGCAGTGGGCATGGGCGCCAGAAGCAGCGAGTTGCGAACACCGT 27246 Query 109856 TCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCAC 109915 || ||| | | |||| || | || |||||| | | ||| | | | | Sbjct 27247 TCTGCTTGATCTGCTCCTTCAAAGAGTTCCAATCCCACAGGTCAC-----TGGGGGTGA- 27300 Query 109916 CATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGT 109975 |||||||||| || ||||| | ||||| || | ||||||| |||| | | || || Sbjct 27301 CATCCCACATGTCGAACTGAAGGATACCCTGAGAAACAGGAGATCCCTCGTACGTCGAGT 27360 Query 109976 ACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCT 110035 | | || ||||| | || | ||| | |||||||| || || || || || || |||| Sbjct 27361 AAGTACCTTCAACAGCAGCGATATCGCACGAAGCCTCCAGGGCAGCGTGGTAAATGGTCT 27420 Query 110036 CAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAA 110095 |||| || || || | | |||| ||| || | || || || | || | | Sbjct 27421 CAAAGATCTGCTTGTTGAGCTGACGAGCCTCGGCAGACTCAAAAGGCATACGAAGGGCCA 27480 Query 110096 TAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGC 110155 ||| |||| || |||||||||||||| | ||||||||| || || ||||||| | Sbjct 27481 GGAACGCATCGGCCAGACCCTGAACACCAACACCAATGGGACGGTGACGCATGTTACTGT 27540 Query 110156 GTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCA 110215 || || | || ||||| ||| || |||| || || | || | Sbjct 27541 TCCGGGCCTCGACAACAGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGACAA 27600 Query 110216 CAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAA--CGTT-TTCGTCTCCTTATTGA 110272 || ||| |||| || || || || | | | ||| | ||| || || | | | | Sbjct 27601 CAACCTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAGTTGTTGGTGTAGTCA---A 27657 Query 110273 CATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGT 110332 || | |||||||||| || || | |||||||||| ||| || || || Sbjct 27658 CAAAGGCAGGGAGAGCAAGCGATGCCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGT 27717 Query 110333 ATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCG 110392 | || | ||| || || || | ||||||||| ||| |||| |||||| || || Sbjct 27718 ACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTTTGGTTAC 27777 Query 110393 ATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACT 110452 ||| |||||| |||||| || | |||| | ||| ||||||| |||||||| | | Sbjct 27778 TCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTT 27837 Query 110453 TGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGA-GACCTTCCTC 110510 |||||||| | ||| | | || | | | | | | | || | | ||||||| Sbjct 27838 CCAGAATGGCATACCACAGCTTCTGAGCCTTG--ATGGTAAGACGGCCACGTCCTTCCTG 27895 Query 110511 CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGC 110570 |||||||||| ||| | |||| ||||||| ||||| ||||| | | || || Sbjct 27896 CTCGTACTTGACGTAAAGAGCCTCGAATTCCTCACCGTAGCAATCAGCCA-AGCCAGGGC 27954 Query 110571 -CTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGT 110629 || || ||| || | ||||| ||| | || || |||||| | ||||||||||| || Sbjct 27955 ACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAGT 28014 Query 110630 CAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGA 110689 |||| ||||||| || ||| | || || ||| ||| || | ||| ||||| Sbjct 28015 CAGGGATCCACAGGGCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCT 28074 Query 110690 GGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGG 110749 || || || | || || | | ||| | |||||| || || || || | || | | Sbjct 28075 TCCGAAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAG 28134 Query 110750 ATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCC 110803 || | |||| || |||| | || || || || ||| ||||| || | Sbjct 28135 CACC---AGGACGCTTGTTGCCACCCTGATCGACGTAACGGGCAGTGTTGTTGAACACAC 28191 Query 110804 TGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGG 110863 |||||||||| ||| || | || ||| || || || ||| ||| | | | Sbjct 28192 GCAGCATAGGAACAATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAGGAACCAGTAG 28251 Query 110864 CACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-C 110922 |||| || ||| | | | ||| |||||||||||| ||| || ||||| Sbjct 28252 CACGGATACGGTGAACGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGG 28311 Query 110923 TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAA 110982 ||| |||| ||| |||| ||||| || || || |||| || | | | ||||| Sbjct 28312 TCT-TGAGGGTATCATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAG 28370 Query 110983 GAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAAC 111042 ||||| | |||||| |||| || || || |||||||| ||||| | || ||| ||| Sbjct 28371 GAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGA-- 28428 Query 111043 AGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGT--ACATCTTTACCGTG 111098 ||| |||| ||||| |||||| || || || | | | | |||| | ||| Sbjct 28429 AGAACTTGCTCGACATGAGGTTGTAAGTTTCCAGAAC--ACGCTCAACATTATCACCCCA 28486 Query 111099 AATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAAC 111158 ||||| | ||||| ||||| | ||| | ||||| |||| | ||| ||||||| Sbjct 28487 GATACCGACAGCAACACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAA- 28545 Query 111159 ACGCT---GAAGGTAA-CTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 ||| |||||||| |||| || |||||||| | |||||||| Sbjct 28546 --GCTTGAGAAGGTAAGATCTT-TCCAGGGTCTTAAATCCAAAGTA 28588 >seq6529 Length=132804 Score = 122 bits (134), Expect = 1e-22 Identities = 391/595 (66%), Gaps = 19/595 (3%) Strand=Plus/Plus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || ||||| || | ||| |||||||| || ||||| ||| | || |||||||| |||||| Sbjct 77020 TAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGGGAGATGTTCTCCATA 77079 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 ||||| || || || || || | | | || ||| ||| | ||||||||| Sbjct 77080 AAGTCGAAGGGGTTGGAGGCCTTGTACACCTTGTCGTT-ACCGAGAGCGACCAGAAGACG 77138 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTT---TCCGAATTCATACCTATGAGATT 119383 |||| ||| |||||||||| || | || | || | |||||||| | ||| Sbjct 77139 GTCGGCGACGAACTCGATATA---GGTCTTCATGAGGTCAGCGTTCATACCGAGAAGAGC 77195 Query 119384 ACACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGA 119443 || || ||||| ||| | ||| | |||||| || | || || || | | |||| Sbjct 77196 GCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATGTC 77255 Query 119444 GTGAAT--AGTTTCTGTCGATG-GTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAA 119500 || || | | || | | | ||||| | ||| ||| || | |||||| Sbjct 77256 CTGGATCAACTGCTTGCTGGGGCGGTTGTT-CAGGTGAGAGAAAAGAAGGCA--GGCAAA 77312 Query 119501 TTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCAT 119560 || ||||| || ||||| |||||||| ||||| || ||| || || ||||| Sbjct 77313 GTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAGACCGGGCAT 77372 Query 119561 GAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTC 119620 | || | || ||||| ||||| | |||| ||||| |||||||| ||||| Sbjct 77373 CATACCACGCTTGCGCAGCCAGAAGATAGAGGCAAAAGCACCAGAGAAGAAGATACCCTC 77432 Query 119621 CACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGAC-TTGTCG---AACCACT 119676 ||| ||| || || | ||||||| ||||||| |||| | ||||| | ||||| Sbjct 77433 AACAGCGGCAAAGGCAACCAGACGCTGGGCAAAAG-TCGACTCCTTGTCAGCAATCCACT 77491 Query 119677 TGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTT 119736 | || ||||||| |||||| || |||||||| | ||| | ||||| | ||| || | Sbjct 77492 TCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGAGGT 77551 Query 119737 GCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTC 119791 | | |||| ||||| || || | ||||| || |||||||||||| Sbjct 77552 ATGTGCGCTGAGCAGGCTCCTTGATGTAGGTGTCAATCAGCAAAGAGTAGGTCTC 77606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588927836487600