Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6498 228 1e-54 seq6529 93.3 5e-14 >seq6498 Length=96284 Score = 228 bits (252), Expect = 1e-54 Identities = 939/1465 (64%), Gaps = 43/1465 (3%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || ||||||| ||||| || || ||||| || || ||||||| || || | || || Sbjct 27144 TAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGAGAAGTTGAC 27203 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || || ||||| || |||| | || ||| |||| ||| || | |||||| | ||| Sbjct 27204 GCAGTGGGCATGGGCGCCAGAAGCAGCGAGTTGCGAACACCGTTCTGCTTGATCTGCTCC 27263 Query 106055 TTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAA 106112 || | | | ||| || | | | | || || | || | ||||||| || || |||| Sbjct 27264 TTCAAAGAGTTCCAATCCCACAGGTCA-CTGGGGGTGACAT-CCCACATGTCGAACTGAA 27321 Query 106113 GCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCA 106172 | | || || || ||||| ||||| | ||| || | ||||| | |||| | Sbjct 27322 GGATACCCTGAGAAACAGGAGATCCCTCGTACGTCGAGTAAGTACCTTCAACAGCAGCGA 27381 Query 106173 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 106232 || || |||||||||| ||||| || ||||| |||||||| | || | || Sbjct 27382 TATCGCACGAAGCCTCCAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAGCT 27441 Query 106233 CCTTGGCTTCATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACATCCGCGAG 106287 || || | || ||||| | || || | || || |||| || || Sbjct 27442 GACGAGCCTCGGCAGACTCAAAAGGCATACGAAGGGCCAGGAACG-----CATCGGCCAG 27496 Query 106288 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAAC 106347 ||| |||||||| | |||||| || | ||| ||||| ||| || || || |||| Sbjct 27497 ACCCTGAACACCAACACCAATGGGACGGTGACGCATGTTACTGTTCCGGGCCTCGACAAC 27556 Query 106348 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 106407 || || || ||||||| ||||| | || | ||||| ||| |||| || Sbjct 27557 AGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGACAACAACCTTGGTGACATC 27616 Query 106408 ATGAAGTTTTTCATAATCAAA--AGT-GCGAGTCTCTTCATTGACATACTTTGGAAGGGC 106464 || || || | | || | ||| | || | ||| ||| | || || || Sbjct 27617 GTGCAGCTTCTGGAAGTCGTAGCAGTTGTTGGTGTAGTCA---ACAAAGGCAGGGAGAGC 27673 Query 106465 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 106524 | |||||||| ||||| ||||| |||||| | | |||||| | ||| || || Sbjct 27674 AAGCGATGCCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGTACTCGATAATCTCAGT 27733 Query 106525 ACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGC 106584 || | ||||||||| ||| || |||| ||||||||||||||||| |||||| Sbjct 27734 GCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTTTGGTTACTCTTGCGGTTGCAGTG 27793 Query 106585 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 ||||||||| | |||| | || | || ||||||||||| | | ||||| || | ||| Sbjct 27794 ATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATGGCATACCA 27853 Query 106645 CA-CATCGGCGGCTGGTACAATGGC--GTTGGCC-CGTCCCTCCGCCTCGTACTTTGTGT 106700 || | || | | || | |||| | |||| ||||| ||| ||||||||| || Sbjct 27854 CAGCTTCTGAGCCTTG----ATGGTAAGACGGCCACGTCCTTCCTGCTCGTACTTGACGT 27909 Query 106701 AGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGA 106760 | || || || || |||||||| || | | || || || || || || | Sbjct 27910 AAAGAGCCTCGAATTCCTCACCGTAGCAATCAGCCAAGCCAGGGCACTCGTTGGGGCACA 27969 Query 106761 AAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 106820 || | ||||| || || |||||| ||||||||||| | ||| || |||||||||| Sbjct 27970 TGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAGTCAGGGATCCACAGGG 28029 Query 106821 ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGA 106880 || | ||| | | ||| ||| || | ||| ||||| || | ||||||| Sbjct 28030 CAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGAAGGTCAAGGA 28089 Query 106881 ACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC- 106939 |||| | | ||| |||||||| ||||| || || | || | || || ||||| Sbjct 28090 ACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACC---AGGACGCT 28146 Query 106940 -----CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 106994 ||| | |||| || || || || ||| ||| || || || ||||| |||| || Sbjct 28147 TGTTGCCACCCTGATCGACGTAACGGGCAGTGTTGTTGAACACACGCAGCATAGGAACAA 28206 Query 106995 TACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGA 107054 |||| | || ||| || || || ||| || | | || | | | || | Sbjct 28207 TACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGAA 28266 Query 107055 TGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCAT 107114 || | || ||||| || ||| ||| ||||| ||||| | | || || ||| Sbjct 28267 CGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCAT 28326 Query 107115 AGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC 107174 ||||||| | ||| ||||||||| || | | | |||||| || | ||| || Sbjct 28327 AGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCT 28386 Query 107175 TTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACAT 107232 || ||||| || ||||||||||| || | |||||| ||| | | |||| ||||| Sbjct 28387 GAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGA--AGAACTTGCTCGACAT 28444 Query 107233 CTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACG 107292 || ||| || |||| ||| |||| | || || ||| |||| || ||||| Sbjct 28445 GAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAGATACCGACAGCAACACG 28504 Query 107293 CATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGAT-AGCTCT 107351 ||||| ||||| || || || | | ||||||| ||| |||| | || ||| Sbjct 28505 CATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGATCT 28564 Query 107352 TCTCAAGGGTTTTGAGACCAAAGTA 107376 | || ||||| || | |||||||| Sbjct 28565 T-TCCAGGGTCTTAAATCCAAAGTA 28588 >seq6529 Length=132804 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| ||| ||| ||||||||||| || || ||||| || || ||||| || || Sbjct 77307 GGCAAAGTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAGACC 77366 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||| | ||| ||||| || ||| | |||| | || | || ||||||||||| Sbjct 77367 GGGCATCATACCACGCTTGCGCAGCCAGAAGATAGAGGCAAAAGCACCAGAGAAGAAGAT 77426 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAA 117451 |||||| ||| ||||| |||| || |||| ||| || | ||| | |||| ||| Sbjct 77427 ACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCAAAAG-TCGACTCCTTGTCAGCAA 77485 Query 117452 ACCATTTCATTGCCCATTTCGCCTT 117476 ||| |||| ||||| | ||||| Sbjct 77486 TCCACTTCAGGGCCCAGTCGGCCTT 77510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589932554320080