Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6498 116 4e-21 >seq6498 Length=96284 Score = 116 bits (128), Expect = 4e-21 Identities = 441/685 (64%), Gaps = 14/685 (2%) Strand=Plus/Plus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 ||| ||||| || || || || | | || ||||| || || || || ||||| | | Sbjct 27917 CTCGAATTCCTCACCGTAGCAATCAGCCAAGCCAGGGCACTCGTTGGGGCACATGAGGGT 27976 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||| || | | || | || | |||| || | || || ||||| || || | || Sbjct 27977 CCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAGTCAGGGATCCACAGGGCAAGGAA 28036 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 ||||| | || | | || || || || ||| | ||| ||||| || || | Sbjct 28037 CAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGAAGGTCAAGGAACTCAAA 28096 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 | |||||| ||||| || || | || || || | |||| || || || || || || Sbjct 28097 CACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTGTTGCCACC 28156 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 ||||| | || | |||||| ||||| | || | | ||| || |||||||| || || Sbjct 28157 CTGATCGACGTAACGGGCAGTGTTGTTGAACACACGCAGCATAGGAACAATACCGTTCGA 28216 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAA--TTGAAATA 48482 |||| || || || | ||| || ||| |||| | ||| || |||| | Sbjct 28217 GGTACCGTTAGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGAACGTTGAGA-- 28274 Query 48483 CCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCT 48542 || |||||||| ||||| || || || | |||||| || ||||||||||| || ||| Sbjct 28275 CCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCT 28334 Query 48543 TCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTT 48602 || ||||| || || |||| | || | || || ||| | || || ||| || Sbjct 28335 TCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTA 28394 Query 48603 CCTGAATTAAATAATGTTGGAGATGCATGAATAAACCA-TTTCTCTGATAACAATTTATA 48661 || | || || | || ||||| || ||| | || | || ||| || | | || || Sbjct 28395 CCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTC-GACATGAGGTTGTA 28453 Query 48662 TGTTTCAATAACAGAATCTA---TATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 ||||| | |||| || | |||| || | ||||| | || |||||||| | Sbjct 28454 AGTTTCCAGAACACGCTCAACATTATCACCCCAG----ATACCGACAGCAACACGCATAA 28509 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||| | ||||| | || ||||| ||| || | || | ||| || ||| |||||| Sbjct 28510 TCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGATCTTTCCA 28569 Query 48778 ATGTTTTAAAACCAAAATAGTTGTA 48802 || ||||| ||||| || | ||| Sbjct 28570 GGGTCTTAAATCCAAAGTACTGGTA 28594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562062833552880