Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6394 107 1e-18 seq6490 87.8 1e-12 >seq6394 Length=53086 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| ||||| || || ||| | || | || || | ||||||||| || || Sbjct 6593 CTCCTTCTGAATGTTGTAGTCCGAGAGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAA 6652 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| |||||||| |||| ||||| ||||||||||| |||||| || ||| Sbjct 6653 AATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGACTTAACATT 6712 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || |||| ||| ||||| | ||||| || ||||| |||| || || || Sbjct 6713 GTCGATGGTATCCGACGACTCGACCTCAAGGGTAATTGTCTTTCCGGTCAGGGTCTTGAC 6772 Query 48755 AAAAATCTGCAT 48766 ||||||||||| Sbjct 6773 GAAAATCTGCAT 6784 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| ||||| || | ||| |||| |||| ||||||||| ||||| Sbjct 6365 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTCCTCCAGCTGCTTACCAGCAAA 6424 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| || |||| || | |||||||||||| ||||| || || Sbjct 6425 GATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTGACGTT 6484 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| ||||| | ||||| || ||||| |||| ||| || || Sbjct 6485 GTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCAC 6544 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 6545 GAAGATCTGCAT 6556 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || |||||||| || || | || | || || | |||| Sbjct 6810 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCGAGCTGC 6869 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || || || ||||| ||||| || |||| ||| | ||||||||||| ||||| Sbjct 6870 TTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTG 6929 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | || || | ||| ||||| | ||||| || ||||| ||| Sbjct 6930 GACTTGACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTAATGGTCTTTCCGGTC 6989 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || ||||||||||| Sbjct 6990 AGGGTCTTGACGAAAATCTGCAT 7012 >seq6490 Length=90610 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/204 (70%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 || || || ||||| ||||| || | || | || |||| |||||| || || || ||| Sbjct 85282 TTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAATC 85223 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 || ||||| || |||| ||||| |||||||||||| ||||| || || | Sbjct 85222 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 85163 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | | || || | ||| ||||| | || ||||| || ||||| | || || || ||| Sbjct 85162 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAA 85103 Query 48759 ATCTGCATCGTG---TGTACGTGT 48779 ||||||||| || ||||| ||| Sbjct 85102 ATCTGCATCTTGACCTGTACATGT 85079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380907227607066