Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6498 224 2e-53 seq6529 170 4e-37 >seq6498 Length=96284 Score = 224 bits (248), Expect = 2e-53 Identities = 891/1387 (64%), Gaps = 35/1387 (3%) Strand=Plus/Plus Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965 ||||||||| | |||||| ||||| | | ||| | | |||||||| ||| |||||||| Sbjct 27101 AGGGTTGACAACCTGGAACTCACCAGCCAACACACGGCGCTGGTAAATGTTCGAAGTGTA 27160 Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025 ||||||| || ||||||||| ||||||||||| | ||| || ||||||||||| || Sbjct 27161 AGGCTCGAAGCACTCGTTGTTACCCAGAATCTGAGAAGTTGACGCAGTGGGCATGGGCGC 27220 Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC--CGAAGCTCTGCCCAG 213083 || || || ||| | || |||| || ||| | | | ||| | ||| Sbjct 27221 CAGAAGCAGCGAGTTGCGAACACCGTTCTGCTTGATCTGCTCCTTCAAAGAGTT--CCAA 27278 Query 213084 TCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCT 213143 ||||| |||||| | | || | ||||||||| ||||| | ||| || Sbjct 27279 TCCCA---------CAGGTCACTGGGGGTGACATCCCACATGTCGAACTGAAGGATACCC 27329 Query 213144 TTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAG 213203 | || || |||| ||| | ||||| | || | | || | ||||| Sbjct 27330 TGAGAAACAGGAGATCCCTCGTACGTCGAGTAAGTACCTTCAACAGCAGCGATATCGCAC 27389 Query 213204 GACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCC 213263 || |||| ||||||||||| ||| ||||| ||||| |||| | ||||||||| ||| Sbjct 27390 GAAGCCTCCAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAGCTGACGAGCC 27449 Query 213264 TCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCG 213323 || | ||| || ||||| | | ||||| |||| ||||| ||||| || || Sbjct 27450 TCGGCAGACTCAAAAGGCATACGAAGGGCCAGGAACGCATCGGCCAGACCCTGAACACCA 27509 Query 213324 ATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTG 213383 | || ||||| | ||| | || |||| || | ||| | | ||||| ||| Sbjct 27510 ACACCAATGGGACGGTGACGCATGTTACTGTTCCGGGCCTCGACAACAGGGTAGTGGTTC 27569 Query 213384 CAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCG 213443 || ||||| ||| | ||||||| | || |||||||||| | ||| | || | Sbjct 27570 ACATCAATGATACGGTTCAAGTTGCGGACAACAACCTTGGTGACATCGTGCAGCTTCTGG 27629 Query 213444 TGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTG 213503 | | | || | || | ||||| |||| || || | |||| |||| Sbjct 27630 AAGTCGTAGCAGTTGTTGGTGTAGTCAACAAAGGCAGGGAGAGCAAGCGATGCCAAGTTG 27689 Query 213504 CAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCAT 213563 || || || ||||| | || | |||||| || ||||| ||||| |||||| | Sbjct 27690 CACACAGCGACCTCATCAGGAGCGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACTG 27749 Query 213564 CGGATGGTGCCCAGGTTCTGGTGGTTTGACT-TTGCGTTGGCAGA-ATCCTTGTAGAGCA 213621 || || || |||||||||| ||||| ||| ||||| | |||| ||||||||| | || Sbjct 27750 CGAATAGTTCCCAGGTTCTTTTGGTT--ACTCTTGCGGTTGCAGTGATCCTTGTACAACA 27807 Query 213622 TGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACCTGGC 213679 || | ||| || ||||| ||| | |||| || ||| ||| || | | || Sbjct 27808 TGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAAT--GGCATACCACAGCTTCTGAGC 27865 Query 213680 CTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAA 213739 ||||| | | | || ||| | |||||||| |||| || | | ||| Sbjct 27866 CTTGATGGTAAGACGGCCACGTCCTTCCTG---CTCGTACTTGACGTAAAGAGCCTCGAA 27922 Query 213740 TTCGTGGCCCCAG-ACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGT 213798 ||| | || || | | | | || || || || ||| ||||||||| |||| | Sbjct 27923 TTCCTCACCGTAGCAATCAGCCAAG-CCAGGGCACTCGTTGGGGCACATGAGGGTCCATT 27981 Query 213799 CCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGG 213857 | |||| | |||| || | || |||||||| ||| |||| |||||| || ||||| Sbjct 27982 CGCCGTTCTTCTCA-ACACGCTTCATGAACAAGTCAGGGATCCACAGGGCAAGGAACAAA 28040 Query 213858 TCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATG 213917 || | | | |||| ||| || ||| || || || || || || ||||| | Sbjct 28041 TCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGAAGGTCAAGGAACTCAAACACA 28100 Query 213918 TCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGG 213974 || |||||||||||||||| ||| |||||||| || || | || | ||||| ||||| Sbjct 28101 TCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTGTTGCCACCCTGA 28160 Query 213975 TCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGT 214034 || || | ||| ||||||| | ||||| | || || | ||||| || Sbjct 28161 TCGACGTAACGGGCAGTGTTGTTGAACACACGCAGCATAGGAACAATACCGTTCGAGGTA 28220 Query 214035 CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGGTTGCTCATGGAGAGCCCTA 214092 ||||| || || || || || || || | || | | | || | | |||| || | Sbjct 28221 CCGTTAGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGAACGTTGAGA--CCGA 28278 Query 214093 TGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCA 214152 | ||||| || |||||||||||| || ||| | | | || || ||| || | | Sbjct 28279 TACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTCGA 28338 Query 214153 TGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAG 214212 | ||||| || | | || | |||||||||| || ||||| ||| | | || | Sbjct 28339 TACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGG 28398 Query 214213 AGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCT 214272 |||||| || || || ||| || | | |||||| | || | ||| |||| || | Sbjct 28399 CGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGAGGTTGTAAGTTT 28458 Query 214273 CCAGGAC 214279 |||| || Sbjct 28459 CCAGAAC 28465 >seq6529 Length=132804 Score = 170 bits (188), Expect = 4e-37 Identities = 484/736 (66%), Gaps = 17/736 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || || || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 77016 CTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGGGAGATGTTCTC 77075 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTT-CCAGCA 47957 ||| ||| ||||||||||| | || |||||| |||| || | |||| | Sbjct 77076 CATAAAGTCGAAGGGGTTGGAGGCCTTGTACACCT-TGTCGTTACCGAGAGCGACCAGAA 77134 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | | || |||||| ||||||| || | ||||||| |||||| || | || | Sbjct 77135 GACGGTCGGCGACGAACTCGATATAGGTCTTCATGAGGTCAGCGTTCATACCGAGAAGAG 77194 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 ||| | ||||| || || ||||||||||| || ||||| || | || | Sbjct 77195 CGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATGATGT 77254 Query 48078 GCTT----AAC-GCGGGACTCTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGC 48131 || ||| || | ||| || | ||||| |||||| | | || | || Sbjct 77255 CCTGGATCAACTGCTTG---CTGGGGCGGTTGTT---CAGGTGAGAGAAA---AGAAGGC 77305 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 ||||||||||| |||| | || || || || ||| ||| |||||||||| |||| Sbjct 77306 AGGCAAAGTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAGAC 77365 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 | ||||| | || | || |||||||| || | || |||| ||||||||||||| Sbjct 77366 CGGGCATCATACCACGCTTGCGCAGCCAGAAGATAGAGGCAAAAGCACCAGAGAAGAAGA 77425 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 | ||||| || || || || || || | || | |||| | | |||||| | | Sbjct 77426 TACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCAAAAGTCGACTCCTTGTCAGCAA 77485 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 |||| || |||||||| ||||| ||||| || || || || ||||| || Sbjct 77486 TCCACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGA 77545 Query 48372 AGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCT 48431 |||| | ||| || | | | ||| | ||||| | |||| | ||| ||| Sbjct 77546 AGAGGTATGTGCGCTGAGCAGGCTCCTTGATGTAGGTGTCAATCAGCAAAGAGTAGGTCT 77605 Query 48432 CAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCT 48491 | ||||| | ||||| || ||||||||| ||||||||| | ||| || | || Sbjct 77606 CCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGGGCTTCGGGGATCT 77665 Query 48492 GCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 | || || | ||||| | ||| | || ||||| ||||| || || || ||||| || | Sbjct 77666 GGACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAAGCGGCGA 77725 Query 48552 AGAAGGCAAGGACATG 48567 |||||||||| || || Sbjct 77726 AGAAGGCAAGAACGTG 77741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931456623905280