Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq6498 210 4e-49 seq6529 147 4e-30 >seq6498 Length=96284 Score = 210 bits (232), Expect = 4e-49 Identities = 828/1278 (65%), Gaps = 51/1278 (4%) Strand=Plus/Plus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAG 221477 ||||||||||||||| ||||||||||||||| ||||||||| || | ||||||| || Sbjct 27398 CAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAG-CTGACGAGCCTCGGCAG 27456 Query 221478 AAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGA 221537 | || |||||||| || | | || | |||||||| ||||| || || | ||| | Sbjct 27457 ACTCAAAAGGCATACGAAGGGCCAGGAACGCATCGGCCAGACCCTGAACACCAACACCAA 27516 Query 221538 TGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTC 221595 |||| | ||| | | |||| | ||| || || || || || ||| || || Sbjct 27517 TGGGACGGTGACGCATGTTACTGTTCCGG--GCCTCGACAACAGGGTAGTGGTTCACATC 27574 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 || | | ||| | ||| | | || || || ||| |||||||||| Sbjct 27575 AATGATACGGTTCAAGTTGCGGACAACAACCTTGGTGACATCGTGCAGCTTCTGG----- 27629 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAA-CGCTGG 221714 || ||| || || || | | || ||||| || || |||| || || Sbjct 27630 -------AAGTCGTAGCAGTTGTTGGTGTAGTCAACAAAGGCAGGGAGAGCAAGCGATG- 27681 Query 221715 CCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGT 221774 ||| ||| ||||| || ||||| || | |||| || ||||| || || |||| Sbjct 27682 CCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGTACTCGATAATCTCAGTGCAAAGGT 27741 Query 221775 TGCTGCACTTG--ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCCT 221831 || | ||| || || ||||||| || || ||| |||||| ||| ||| | |||| Sbjct 27742 TG--GAACTGCGAATAGTTCCCAGGTTCTTTTGGTTACTCTTGCGGTTG-CAGTGATCCT 27798 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 |||| | ||| || || ||||||||| |||||| ||||||| | ||| || | Sbjct 27799 TGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATGGCATACCACAGCT 27858 Query 221892 CTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTT-TCATACCCG--GTATAG 221947 |||| || | | || ||| || | || || | || ||| | ||| || Sbjct 27859 -TCTGAGCCTTGATGGTAA----GACGGCCACGTCCTTCCTGCTCGTACTTGACGTAAAG 27913 Query 221948 AGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATC 222007 ||| | | || | |||||||| || ||| ||| || ||| | ||| ||||| Sbjct 27914 AGCCT--CGAATTCCTCACCGTAGCAATCAGCCAAGCCAGGGCACTCGTTGGGGCACATG 27971 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 || |||| | ||| | | || | || |||||| | ||| ||||||||||| || Sbjct 27972 AGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAGTCAGGGATCCACAGGGCA 28031 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | || | ||| | | || ||||||| |||| ||| |||| || || | ||| Sbjct 28032 AGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGAAGGTCAAGGAAC 28091 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 ||||| | |||||||||||||||||||| || | ||| | ||| || || ||||||||| Sbjct 28092 TCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTGTTG 28151 Query 222188 CCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246 ||||||||||| | | | ||| | |||||| | || || | || || | || Sbjct 28152 CCACCCTGATCGA-CGTAACGGGCAGTGTTGTTGAACACACGCAGCATAGGAACAATACC 28210 Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGA 222306 ||| || |||||| ||||| |||||| | ||| || | || ||| | | Sbjct 28211 GTTCGAGGTACCGTTAGTGCCGGCAATGTAGGAACCAGTAGCAC---GGATACGGTGAAC 28267 Query 222307 CATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 || ||||||||||| || || |||||||| || ||| ||||||| || || Sbjct 28268 GTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATA 28327 Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTT 222423 ||| || || ||| ||||||||| | || | || || || || || | ||||| | Sbjct 28328 GATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTG 28387 Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483 | || || |||||| || || || ||| |||||| || ||| | || ||||| || Sbjct 28388 AGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGAG 28447 Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCTCA 222542 | ||| || || | || | | | || || ||| || | | | || | || Sbjct 28448 GTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAGATACCG-ACAGCAACACGCA 28506 Query 222543 TGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGATTT 222600 | ||||| ||| || | ||| ||| || | |||| |||| ||||| ||| | Sbjct 28507 TAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGA--AGGTAAGATCT 28564 Query 222601 TTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGC 222660 |||||| ||||| || |||||||| | | || ||||| | | | | || | ||| | Sbjct 28565 TTCCAGGGTCTTAAATCCAAAGTACTGGTAGTTGAAGTCACGGTCATAGACGATGGCCGA 28624 Query 222661 GTCCAGCTCCGACTTGTG 222678 ||||||||| |||||| Sbjct 28625 GTCCAGCTCTTCCTTGTG 28642 >seq6529 Length=132804 Score = 147 bits (162), Expect = 4e-30 Identities = 386/573 (67%), Gaps = 17/573 (3%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||| | |||||||||||||| | ||| |||||||||||| |||||||| Sbjct 77864 GAGATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCCGAGGAGATTGAC 77805 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCT-ATC-CAAAG-ACGAGCAGCATTTTCTC 25590 || ||||||| | ||| |||| || | || ||||| | |||||| || || Sbjct 77804 CTTTCCAAGGATCTTCACGACTGGAACAACCGCATGACAAAGGATGAGCAGTTCTTCATC 77745 Query 25591 AAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 |||| | || ||||| || || ||||| ||||| || |||||||| || |||| Sbjct 77744 TCTCACGTTCTTGCCTTCTTCGCCGCTTCTGACGGTATTGTCAACGAGAACTTGGTCGAG 77685 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | ||| | || || ||| | || ||| || ||||||||||||||||| Sbjct 77684 CGTTTCTCTGCTGAGGTCCAGATCCCCGAAGCCCGTTGCTTCTACGGTTTCCAGATCATG 77625 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTC 25770 || || || | ||||| ||| || | ||| | || ||||| | || Sbjct 77624 ATGGAGAACATCCACTCGGAGACCTACTCTTTGCTGATTGACACCTACATCAAGGAGCCT 77565 Query 25771 GCCGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGAGGAAGG 25828 || || | | || || || ||||| || ||| || ||| |||| | |||| Sbjct 77564 GCTCAGCGCACATAC-CTCTTCAACGCCATTGA-CACTATTCCCTGCATTCGCCGCAAGG 77507 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTGGTA 25887 | |||||| |||||||||| | | || | | | || |||| | |||| ||||| Sbjct 77506 CCGACTGGGCCCTGAAGTGGATTG-CTGACAAGGAGTCGACTTTTGCCCAGCGTCTGGTT 77448 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT- 25946 |||||||| ||||| ||||| ||||| ||| ||| | ||||| | ||||||||||| Sbjct 77447 GCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCTATCTTCTGGCTG 77388 Query 25947 --CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGA 26003 ||||| || | |||||||| ||| ||||| ||||||||||| ||| | || Sbjct 77387 CGCAAGC---GTGGTATGATGCCCGGTCTG-ACTTTCTCCAACGAGCTTATCTCTCGTGA 77332 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCT 26036 |||||||| |||| || ||||||||||| || Sbjct 77331 TGAGGGTCTTCACACGGACTTTGCCTGCCTTCT 77299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928768843716480