Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6394 111 1e-18 >seq6394 Length=53086 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| ||||| ||| || || || || || || | ||||| Sbjct 6563 ACGGAGACGGAGAACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGAGAGAGT 6622 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| ||||| ||||| ||||| ||||| || || ||||| || || ||||| || Sbjct 6623 ACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCCGGGGGAATACC 6682 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAA 480729 |||||||| |||||||| || ||| || || ||||| | | | | | ||| Sbjct 6683 CTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCCGACGACTCGACCT-CAA 6741 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||| || || ||||| || ||||| |||||||| || Sbjct 6742 GGGTAATTGTCTTTCCGGTCAGGGTCTTGACGAAAATCTG 6781 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || || || || ||| || || | || || |||| || || Sbjct 6335 ACGAAGACGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 6394 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || || ||||| |||||||| |||||||| || || || ||||| || || Sbjct 6395 ACGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGAGGGATGCC 6454 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAA 480729 |||||||| || ||||| ||||| ||||| ||||||| | | | | ||| Sbjct 6455 CTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCAATGGTATCAGAAGACTCGACCT-CAA 6513 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||||| || || ||||| |||||||| ||||| || || Sbjct 6514 GGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTG 6553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267898581878216