Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6498 205 1e-47 seq6529 93.3 5e-14 >seq6498 Length=96284 Score = 205 bits (226), Expect = 1e-47 Identities = 935/1468 (64%), Gaps = 45/1468 (3%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCT-ATCTTCAACGGCTCGATGGCATCCTCAT 75204 |||||||| | || ||||| || |||| || | |||| ||| ||||||| | | Sbjct 28588 TACTTTGGATTTAAGACCCTGGA-AAGATCTTACCTTCTCAAGCTTGATGGCAAGATTGT 28530 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 || || ||| ||||| | ||||| || || |||| ||| || || | |||| Sbjct 28529 CGAGCGTCCTCAGCACATGATTATGCGTGTTGCTGTCGGTATCTGGGGTGATAATGTTGA 28470 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCA 75322 ||| |||| || ||| || ||||| |||| | | ||| |||||| | || Sbjct 28469 GCGTGTTCTGGAAACTTACAACCTCATGTCGAGCAAGTTCT--TCACTCACGCCTCTCCT 28412 Query 75323 ACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAAC 75382 ||||||||||| || ||||| || || ||| | || |||||| | | | || Sbjct 28411 ACCCTCTTCAACGCCGGTACCCCTCAGCCTCAGCTTTCTTCCTGCTTCTTGGTAGACATG 28352 Query 75383 AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAG 75442 ||||||||| ||| | |||||||||| || || | | ||||| ||||| ||| Sbjct 28351 AAGGAGGACAGTATCGAAGGTATCTATGATACCCTCAAGACCTGTGCTATGATCTCCAAG 28292 Query 75443 TGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGG 75502 ||| || ||||| || | || | || | | | || | | || ||| Sbjct 28291 ATGGCGGGTGGTATCGGTCTCAACGTTCACCGTATCCGTGCTACTGGTTCCTACATTGCC 28232 Query 75503 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 75562 || || || ||| || | |||||| |||| ||||| || || || ||| ||| || Sbjct 28231 GGCACTAACGGTACCTCGAACGGTATTGTTCCTATGCTGCGTGTGTTCAACAACACTGCC 28172 Query 75563 CGCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAA 75616 || || || |||| | || ||||| || | | || | ||| |||| Sbjct 28171 CGTTACGTCGATCAGGGTGGCAACAAGCGTCCT---GGTGCTTTTGCCATTTACCTGGAG 28115 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 || ||||| || ||| | | ||||||||||| | || ||||| ||| | || ||| Sbjct 28114 CCGTGGCACGCTGATGTGTTTGAGTTCCTTGACCTTCGGAAGAACCACGGTAAGGAGGAG 28055 Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736 ||| | | ||| | || |||||||||| || ||| | ||||||||||| ||| Sbjct 28054 ATTCGCGCTCGCGATTTGTTCCTTGCCCTGTGGATCCCTGACTTGTTCATGAAGCGTGTT 27995 Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCG 75796 ||| || || ||||| | || | || || || || || || | | || Sbjct 27994 GAGAAGAACGGCGAATGGACCCTCATGTGCCCCAACGAGTGCCCTGGCTTGGCTGATTGC 27935 Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG 75856 |||||||| || || || || ||| ||||| || |||| || | | | || Sbjct 27934 TACGGTGAGGAATTCGAGGCTCTTTACGTCAAGTACGAGCAGGAAGGACGTGGC----CG 27879 Query 75857 ACTGTACCAGC----CGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTG 75911 || ||||| | | | || | | ||| | || ||||| || | ||||||||||||| Sbjct 27878 TCT-TACCATCAAGGCTCAGAAGCTGTGGTATGCCATTCTGGAAGCTCAGACGGAGACTG 27820 Query 75912 GAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGG 75971 | | || | ||| | ||||||||| || ||| ||||||||||||||||| ||| Sbjct 27819 GTAACCCTTTCATGTTGTACAAGGATCACTGCAACCGCAAGAGTAACCAAAAGAACCTGG 27760 Query 75972 GAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGA 76031 |||| || || || || |||||||| || ||| | |||||| | | |||||| Sbjct 27759 GAACTATTCGCAGTTCCAACCTTTGCACTGAGATTATCGAGTACTGCGCTCCTGATGAGG 27700 Query 76032 CGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGC- 76090 ||||| ||||| |||||||| | || || || | ||| ||| | || | Sbjct 27699 TCGCTGTGTGCAACTTGGCATCGCTTGCTCTCCCTGCCTTTGT---TGACTACACCAACA 27643 Query 76091 ACT--TTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACC 76148 ||| | || | | || || || || |||| ||| ||||| | || | |||| Sbjct 27642 ACTGCTACGACTTCCAGAAGCTGCACGATGTCACCAAGGTTGTTGTCCGCAACTTGAACC 27583 Query 76149 GAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACA 76208 | ||||||| || || || |||| || || || ||| ||||| ||| Sbjct 27582 GTATCATTGATGTGAACCACTACCCTGTTGTCGAGGCCCGGAACAGTAACATGCGTCACC 27523 Query 76209 GACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACG--- 76265 | || |||||| | |||||||| ||||| || |||| || || | || || Sbjct 27522 GTCCCATTGGTGTTGGTGTTCAGGGTCTGGCCGATG-----CGTTCCTGGCCCTTCGTAT 27468 Query 76266 --CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCA 76323 | ||||| || | || || || | || | |||||||| ||||| || || Sbjct 27467 GCCTTTTGAGTCTGCCGAGGCTCGTCAGCTCAACAAGCAGATCTTTGAGACCATTTACCA 27408 Query 76324 CGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383 ||| |||||||||| || || | |||| | ||||| | || ||| | || Sbjct 27407 CGCTGCCCTGGAGGCTTCGTGCGATATCGCTGCTGTTGAAGGTACTTACTCGACGTACGA 27348 Query 76384 GGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT 76443 ||| ||||| | || || || | |||||||| || ||||||| | || | || || | Sbjct 27347 GGGATCTCCTGTTTCTCAGGGTATCCTTCAGTTCGACATGTGGG-ATGTCACCCCCAG-T 27290 Query 76444 CAAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501 | | | || ||| | | | ||||| | |||||| |||| ||| |||| ||| Sbjct 27289 GACCTGTGGGATTGGAACTCTTTGAAGGAGCAGATCAAGCAGAACGGTGTTCGCAACTCG 27230 Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561 || | |||| || ||||| || || || || | || || ||||||| || || ||| Sbjct 27229 CTGCTTCTGGCGCCCATGCCCACTGCGTCAACTTCTCAGATTCTGGGTAACAACGAGTGC 27170 Query 76562 TTTGAACCATACACAACAAACATCTACC 76589 || || || ||||| | ||||| |||| Sbjct 27169 TTCGAGCCTTACACTTCGAACATTTACC 27142 >seq6529 Length=132804 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 65026 AAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCGCCT 65084 ||||| | ||||| |||| ||| ||| |||| | ||| | || ||| |||| || Sbjct 77510 AAGGCCGACTGGGCCCTGAAGTGGATTGCTGACAAGGAGTCGA-CTTTTGCCCAGCGTCT 77452 Query 65085 TTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTG 65144 |||| ||||| ||| ||||||||||||||||| || | || | |||| | || Sbjct 77451 GGTTGCCTTTGCCGCTGTTGAGGGTATCTTCTTCTCTGGTGCTTTTGCCTCTATCTTCTG 77392 Query 65145 GTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGA 65204 | || ||||| ||| | ||||| || || ||||| || || ||||| || || || Sbjct 77391 GCTGCGCAAGCGTGGTATGATGCCCGGTCTGACTTTCTCCAACGAGCTTATCTCTCGTGA 77332 Query 65205 TGAGGGTCTCCACCAGGAGTTTGCC 65229 ||||||||| ||| ||| |||||| Sbjct 77331 TGAGGGTCTTCACACGGACTTTGCC 77307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596520815520960