Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6498 176 1e-38 seq6529 136 1e-26 seq6134 104 7e-17 seq6274 96.9 1e-14 seq6186 91.5 4e-13 >seq6498 Length=96284 Score = 176 bits (194), Expect = 1e-38 Identities = 574/884 (65%), Gaps = 17/884 (2%) Strand=Plus/Plus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||| ||| || | ||||||| ||| ||||| ||||| || || || | ||||| | Sbjct 27712 CGCAGTACTCGATAATCTCAGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTTT 27771 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 ||||| || | ||| || ||||||||| | ||| | ||| | || |||||| ||| Sbjct 27772 GGTTACTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCT 27831 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805 | || |||||||| ||| || | | || || || | | |||| Sbjct 27832 GAGCTTCCAGAATGGCATACCACAGCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTT 27891 Query 155806 CCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAG 155865 || ||| || || | || || | | | ||||||||||| |||||| || |||| Sbjct 27892 CCTGCTCGTACTTGACGTAAAGAGCCTCGAATTCCTCACCGTAGCAATCAGCCAAGCCAG 27951 Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAAATT-----TTATTACCGATTACACGCTCCAT 155920 |||||| | |||||| | || | ||| || || || | | |||||| ||| Sbjct 27952 GGCACTCGTTGGGGCACATGAGGGTCCA--TTCGCCGTTCTTCTCAA---CACGCTTCAT 28006 Query 155921 AAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC 155980 || | ||| ||| | ||| ||| | || | || |||||| | || Sbjct 28007 GAACAAGTCAGGGATCCACAGGGCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACC 28066 Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040 ||| |||||||| || || | ||| || | ||||| || |||||||| || || Sbjct 28067 GTGGTTCTTCCGAAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAAT 28126 Query 156041 AGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAA 156097 |||||| |||| | |||| ||||||||||| || || || ||||| || ||||| Sbjct 28127 GGCAAAAGCACCAGGACGCTTGTTGCCACCCTGATCGACGTAACGGGCAGTGTTGTTGAA 28186 Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACC 156157 |||| |||||||||| |||||| || || || || || || ||| ||| | ||||| Sbjct 28187 CACACGCAGCATAGGAACAATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAGGAACC 28246 Query 156158 AGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAG 156216 || | || | | |||| | || || |||||||| | |||| || || || || Sbjct 28247 AGTAGCACGGATACGGTGAACGTTGAGACCGATACCACCCG-CCATCTTGGAGATCATAG 28305 Query 156217 CGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGAT 156276 | || ||| | |||| | |||||||| ||| || || | ||| || | Sbjct 28306 CACAGGTCTTGAGGGTATCATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGA 28365 Query 156277 AGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAA 156336 |||| ||| | ||||| | || || || |||||||| || ||||| | || ||| Sbjct 28366 AGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAG 28425 Query 156337 TAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA-GACCCG 156395 | || |||| | ||||| | ||| || ||| || ||||| |||| |||| Sbjct 28426 TGAAGAACTTGCTCGACATGAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCC 28485 Query 156396 TGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCA 156455 | |||| || || || | ||| ||| |||||||||||||| |||||| |||||| Sbjct 28486 AG-ATACCGACAGCAACACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCA 28544 Query 156456 ATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | |||||||| | | |||||| || ||||| || || || Sbjct 28545 AGCTTGAGAAGGTAAGATCTTTCCAGGGTCTTAAATCCAAAGTA 28588 >seq6529 Length=132804 Score = 136 bits (150), Expect = 1e-26 Identities = 411/628 (65%), Gaps = 10/628 (2%) Strand=Plus/Minus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 ||||||||||| ||| || || | ||||| |||||| || ||||| || || | Sbjct 77659 CCGAAGCCCGTTGCTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCGGAGACCT 77600 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAAC 133423 | ||| || ||||| || |||||||| || | | ||| ||||| || | |||||| Sbjct 77599 ACTCTTTGCTGATTGACACCTACATCAAGGAGCCTGCTCAGC-GCACATACCTCTTCAAC 77541 Query 133424 GCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 |||||| | |||| || ||| || | |||||||| | || ||||| Sbjct 77540 GCCATTGACACTATTCCCTGCATTCGCCGCAAGGCCGACTGGGCCCTGAAGTGGATTGCT 77481 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 |||||| ||| |||||| ||||| ||||| ||||| | || ||||| || || Sbjct 77480 GACAAGGAGTCGACTTTTGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGAGGGTATCTTC 77421 Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603 ||| |||||| || |||||| || ||||| ||||||||||| | || || ||| Sbjct 77420 TTCTCTGGTGCTTTTGCCTCTATCTTCTGGCTGCGCAAGCGTGGTATGATGCCCGGTCTG 77361 Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTA 133663 ||| || ||||| ||||| || | || |||| |||||||| || |||||| | Sbjct 77360 ACTTTCTCCAACGAGCTTATCTCTCGTGATGAGGGTCTTCACACGGACTTTGCCTGCCTT 77301 Query 133664 CTTCACTCTAAATTAGAGCGACC-ACTCAAAAAGAATAAGATTGAAGAAATTATTAGAGA 133722 ||| |||| | | || | ||| | || ||| | ||| | || || || | || Sbjct 77300 CTTTTCTCTCACCT-GAACAACCGCCCCAGCAAGCAGTTGATCCAGGACATCATCACTGA 77242 Query 133723 AGCGGTTGAAATTGAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTAATTGGTAT 133782 || || | |||||| || || | | ||||| || ||| | | | ||||| Sbjct 77241 TGCCGTCGTCATTGAGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCTCTTCTCGGTAT 77182 Query 133783 GAATGATGTGCTGATGCAGCGTTATATTGAATTTGTAGCTGACAG---ATTGGCCGTTCA 133839 ||| | || || ||| || ||||| || || || || ||| | ||| || || Sbjct 77181 GAACGCTGACCTCATGAAGACCTATATCGAGTTCGTCGCCGACCGTCTTCTGGTCGCTC- 77123 Query 133840 GTTAGGTGGGGATAAGATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCATTAG 133899 | ||| || ||| | ||| || |||| || ||||||| ||||||| ||| Sbjct 77122 --TCGGTAACGACAAGGTGTACAAGGCCTCCAACCCCTTCGACTTTATGGAGAACATCTC 77065 Query 133900 CATTGAATCAAAGACTAATTTCTTCGAG 133927 | ||| |||||| || ||||||||| Sbjct 77064 CCTTGGTGGAAAGACCAACTTCTTCGAG 77037 >seq6134 Length=21779 Score = 104 bits (114), Expect = 7e-17 Identities = 126/168 (75%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 251475 GAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533 ||||| |||| ||||||| | ||||| ||||||||| ||||||||||| | ||| |||| Sbjct 931 GAAGCTGAGAGGCACCGTAGGCAATCAAACAATCACGTTCCATTTCACCTAGACGGAGAC 990 Query 251534 CACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCA-TAGGACCGATG 251592 |||| ||||||| | ||| || | |||||||| || | | | || ||||||| || Sbjct 991 CACCCTCGCGAGAACGACCTTCTGTTGGCTGACGGGTCA-ACGAGGCACGAGGACCGGTG 1049 Query 251593 GAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 || || || ||||| | ||||| ||||||||||| |||||| Sbjct 1050 GAACGAGAGTGCATTTTATCTTGGACCATGTGCTTGAGACGTTGGTAG 1097 >seq6274 Length=32951 Score = 96.9 bits (106), Expect = 1e-14 Identities = 178/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | |||||| ||||| ||||| || | || || || || || || || || Sbjct 15107 CTTGACCAGACGACGTTGAATGTAACCTGTCTCGGCAGTCTTGACGGCAGTGTCGATAAG 15166 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702 ||| | |||||| |||| || |||||||| | ||| || || || | | | | Sbjct 15167 ACCTTCGCGACCAGCCATGGCGTGGAAGAAGAACTCACTAGGAGTGAGACCACGGAGATA 15226 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 ||| ||||||||||||| || | ||| ||||| | ||| |||||| || || || || Sbjct 15227 AGAGTTCTCAACGAAACCGCGAGACTCAGGCGAGTAATCGTCCTTGGTGAAATGAGGGAG 15286 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822 || | || || |||| | || |||||||| || ||||| | || || || | Sbjct 15287 AGTGCGGTACTTGAAGCCAAAAGGAATACGCTTACCCTCAACAATTTGTTGACCGACTAG 15346 Query 302823 CGAAATCATCTGCGAAATATT 302843 || | ||||||| ||||| || Sbjct 15347 CGCAGTCATCTGAGAAATGTT 15367 Score = 84.2 bits (92), Expect = 6e-11 Identities = 105/141 (74%), Gaps = 5/141 (4%) Strand=Plus/Plus Query 301813 AGAATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871 |||||||| ||||| |||||| ||||| | || ||||| ||||| |||||||| Sbjct 14313 AGAATTTCCTTCAA-ACGGGGGACACCCAGAGTAACGTTCTTACTGGAC---ACACCAGC 14368 Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 ||| |||||||| ||||| || | || |||| ||||||||||| || || || | Sbjct 14369 AAAATGGAAAGTGTTCAGTGTCATCTGCGTAGCAGGCTCACCAATGGACTGAGCAGCCAA 14428 Query 301932 CATACCAACCATTTCTCCTGG 301952 || ||||||||| || || || Sbjct 14429 CACACCAACCATCTCGCCGGG 14449 >seq6186 Length=25413 Score = 91.5 bits (100), Expect = 4e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 233261 AAAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGA 233320 || || | || ||||||||| ||||||||||||||||||||||||||||| | ||||||| Sbjct 7320 AAGAAGGCTGCAGCACCGTGGGCAATCATACAATCACGTTCCATTTCACCGAAACGCAGA 7379 Query 233321 CCACCATC 233328 |||||||| Sbjct 7380 CCACCATC 7387 Score = 89.7 bits (98), Expect = 2e-12 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 251821 AAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATG 251880 ||||| ||| ||| ||||| || ||||||||| ||||| || ||||| || ||| Sbjct 7668 AAAAGACACTCAATCAAATGGGCAATGGTCATACGAGAAGGAATGGCGTGGGGGTTAATG 7727 Query 251881 ATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTT 251939 |||||||| || | | || || ||| || |||||||||| || || ||| | Sbjct 7728 ATGATGTCTGGAGTGATACCCTCGCGAGTAAAAGGCATATCCTCTT-GTCTGTAAGTAAC 7786 Query 251940 TCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||| || ||||| ||||||||||| ||| ||||| |||||||| Sbjct 7787 ACCAATGGTACCCTTCTGTCCGTGACGGGAAGCAAACTTGTCACCAAT 7834 Score = 86.0 bits (94), Expect = 2e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | ||||||||||||||| ||||||||||||||||| ||||||||||| | Sbjct 7332 GCACCGTGGGCAATCATACAATCACGTTCCATTTCACCGAAACGCAGACCACCATCTCTG 7391 Query 251545 GCCCTACCCTCGGCAGGCTG 251564 || | ||| || | ||||| Sbjct 7392 GCACGACCTTCCACCGGCTG 7411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471694233168654