Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6401 138 1e-26 seq6404 120 4e-21 seq6529 114 2e-19 seq6498 105 8e-17 seq6225 86.0 8e-11 >seq6401 Length=54557 Score = 138 bits (152), Expect = 1e-26 Identities = 268/396 (68%), Gaps = 6/396 (2%) Strand=Plus/Minus Query 18093 CACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTG 18152 || ||| || ||||| ||||| || ||| || ||||||||| || || || | Sbjct 33618 CAGCTTCGGTGAGTCCCACGGCAAGGCCGTTGGTGTCATCATCGAGAACGCCCCTCCCGG 33559 Query 18153 CATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGG 18212 | || |||| ||||| |||||||| ||| | || || || || ||||| Sbjct 33558 TCTCGAGCTTACCGAAGCCGATATCCAGCCCCAGCTCACCCGTCGTCGCCCCGGCCAATC 33499 Query 18213 CGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAA 18272 ||| || |||| || ||||| ||| || ||||||| ||||| || || || ||| Sbjct 33498 CGCCATTACCACCCCCCGCAATGAGAAGGACCGCGTCACCATCCTCTCCGGTACCGAGTT 33439 Query 18273 CGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGT 18332 ||||| || || ||| | || | | ||| || ||||| |||||||| ||| Sbjct 33438 CGGCCGTACCCTGGGCACCCCGATTGCCCTGACCGTTCCCAACGAGGACCAGCGCCCCAA 33379 Query 18333 CGACTATTCCGACATGTGCAAGG------TGCCGCGGCCCTCACACGCCGACTACACCTA 18386 ||||| | ||| | || || | || || || || |||||||| | ||| || Sbjct 33378 GGACTACGGCAACAAGACCATGGACCGCTTCCCCCGCCCATCGCACGCCGATTTCACTTA 33319 Query 18387 CATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGAC 18446 | || ||||||||||||||||| || || ||||| ||||| || || ||||| ||||| Sbjct 33318 CCAGGAGAAGTACGGCATCAAGGCTTCTTCCGGCGGTGGCCGTTCCTCCGCCCGTGAGAC 33259 Query 18447 CCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 | | || |||||||| || || || |||||||| Sbjct 33258 CATTGCTCGTGTCGCCGCTGGTGCCGTTGCCGAGAA 33223 Score = 100 bits (110), Expect = 3e-15 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 19055 CGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTT 19114 ||| || || || || ||||| |||||| || || | || ||||| ||||| ||| Sbjct 32979 CGGTGGTACCGTCACTTGCGTCATTCGCAATGTCCCCTCTGGTCTCGGTGAGCCTGCCTT 32920 Query 19115 TGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATT 19174 ||||||| |||||||| ||| |||||||| ||| |||| || || |||| ||||| || Sbjct 32919 TGACAAGCTCGAGGCCATGCTTGCCCACGCTATGATGTCCATTCCCGCCAGCAAGGCTTT 32860 Query 19175 CGAGATTGGCAGCGGGTTTGCGGGT 19199 ||||||||| ||| || || ||| Sbjct 32859 CGAGATTGGTTCCGGTTTCGCCGGT 32835 >seq6404 Length=55145 Score = 120 bits (132), Expect = 4e-21 Identities = 89/104 (86%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| || |||||||| || || || |||| |||||| | || |||||||||| Sbjct 20293 CCAACTACCTGGATATCAAGCCCCTTCTTGACGTTGGATGCAAGACCGTCGCCAACATGA 20234 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 |||||||||||||||| ||||| || ||||||||||| |||||| Sbjct 20233 TCAAGGGCAAGTCGCCGGAGGAAATTCGCAAGACCTTCAACATC 20190 >seq6529 Length=132804 Score = 114 bits (126), Expect = 2e-19 Identities = 217/317 (68%), Gaps = 3/317 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || ||||||||| ||||| ||| | | || | | | Sbjct 77606 CCGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGGGCTTCGGGGATCT 77665 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 ||||||| ||| || || ||| ||||||| || || ||||| ||||||| Sbjct 77666 GGACCTCAGCAGAGAAACGCTCGACCAAGTTCTCGTTGACAATACCGTCAGAAGCGGCGA 77725 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCGACAC--CCAGT 869807 | || || || ||||| ||| ||| |||| || | | | ||| ||||| Sbjct 77726 AGAAGGCAAGAACGTGAGAGATGAAGAACTGCTCATCCTTTGTCATGCGGTTGTTCCAGT 77785 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | || | ||||| | ||||||||||||||||| |||||||||||||| | Sbjct 77786 CGTGAAGATCCTTGGAAAGGTCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCT 77845 Query 869868 TGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGT 869927 ||||||| | ||| | | ||||| |||||||||||| || || ||||||||||| | Sbjct 77846 TGTACATTTGCCAGATCTCGTGGTACTTGATAGGGAAGAGCACGAAACGGTTGGGGTTTT 77905 Query 869928 CGCGCAACAGGGGTTCG 869944 | | | ||||||||| Sbjct 77906 CCTGAAGGAGGGGTTCG 77922 Score = 105 bits (116), Expect = 8e-17 Identities = 174/250 (70%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| ||||||||||| || | || ||||| Sbjct 77011 GCCTTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAGGGAGATG 77070 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| ||| ||||| | | Sbjct 77071 TTCTCCATAAAGTCGAAGGGGTTGGAGGCCTTGTACACCTTGTCGTTACCGAGAGCGACC 77130 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || ||||||||||| |||||||| || ||||||| | |||||||| |||| Sbjct 77131 AGAAGACGGTCGGCGACGAACTCGATATAGGTCTTCATGAGGTCAGCGTTCATACCGAGA 77190 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | |||| | | ||||| ||||| || ||||||| || |||| Sbjct 77191 AGAGCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATCAGTGATG 77250 Query 868931 ATCTGCCTGG 868940 || | ||||| Sbjct 77251 ATGT-CCTGG 77259 Score = 100 bits (110), Expect = 3e-15 Identities = 199/290 (69%), Gaps = 11/290 (4%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || ||| ||| | |||||| || | || |||||||| | || ||||| Sbjct 77325 ACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAGACCGGGCATCATACCACGCTT 77384 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||| ||||| | | ||| || ||||| ||||| ||||| || |||||||| Sbjct 77385 GCGCAGCCAGAAGATAGAGGCAAAAGCACCAGAGAAGAAGATACCCTCAACAGCGGCAAA 77444 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCGC 869355 | | | || |||| |||||| || ||| |||||||| |||||||||| || Sbjct 77445 GGCAACCAGACGCTGGGCAAAAGT--CGA----CTCCTTGTCAGCAATCCACTTCAGGGC 77498 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCT 869414 |||||||||||| | | | || | ||||| |||||| ||||||| || | Sbjct 77499 CCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGAGGTATGTGC- 77557 Query 869415 TTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | || || ||||||| |||||||| ||||| | || ||||||||| Sbjct 77558 GCTGAGCAGGCTCCTTGATGTAGGTGTCAATCAGCAAAGAGTAGGTCTCC 77607 >seq6498 Length=96284 Score = 105 bits (116), Expect = 8e-17 Identities = 211/313 (67%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| |||||||| || || |||| ||| || || || ||||| || || | ||||| || Sbjct 28157 CTGATCGACGTAACGGGCAGTGTTGTTGAACACACGCAGCATAGGAACAATACCGTTCGA 28216 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| || | ||||| || | || || | ||| || | || Sbjct 28217 GGTACCGTTAGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGAACGTTGAGACC 28276 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || || ||| ||||||||| | || || ||||| || || ||||| || || Sbjct 28277 GATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTC 28336 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| || | ||||| || || || || || | || || Sbjct 28337 GATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGGCTGAGGGGTACC 28396 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||||||| || || | || ||||| |||| | ||||||| || ||| || Sbjct 28397 GGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGAGGTTGTAAGT 28456 Query 1630365 GGCGAGCACGCGC 1630377 | || || ||| Sbjct 28457 TTCCAGAACACGC 28469 >seq6225 Length=28432 Score = 86.0 bits (94), Expect = 8e-11 Identities = 144/208 (69%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 1852044 CGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGA 1852103 |||||||||| || ||| || ||||||||||| | ||| ||| || || || | Sbjct 1105 CGATCTTGGACTTGGGGTCGGAGGAACTCATCTTGCCAC---CGGAGAGACCAGGGACCA 1161 Query 1852104 GCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCAA 1852163 ||||| | || |||| |||| ||| |||| || |||| |||| ||| | Sbjct 1162 TTGGGTTCATCAAGTGGCAGCGGTTCTTGAAGCCCAGCTTGGGCATAGCGTCGTGCGACA 1221 Query 1852164 AGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCT 1852223 |||| ||||||||||| || | || || |||| |||||| || |||||| || || Sbjct 1222 GACCAAAGATCTTGCGCTGATCAAGACCACCGAACTCGGCGTCAACACCGAGGTACTCCT 1281 Query 1852224 CGTCGAGGGCCTGCATGAGCGGGTAGAG 1852251 |||| | ||||||||| ||||| || Sbjct 1282 CGTCCAAAAGCTGCATGAGTGGGTACAG 1309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106602332843814