Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq6498 219 4e-52 seq6394 98.7 9e-16 >seq6498 Length=96284 Score = 219 bits (242), Expect = 4e-52 Identities = 1069/1675 (64%), Gaps = 58/1675 (3%) Strand=Plus/Plus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAAT--ATGTCG--CGGTATTGTTGCAATATT 138413 |||||||| || |||||||| ||| || | ||||| ||| || | | || || Sbjct 26961 ATCTCCCAAACAGTCTTGTAAAGA----GACTTGATGTCCGCCGGAATGCTGGGGATGTT 27016 Query 138414 TTGAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAA 138473 || || |||||| ||| ||||||||| || |||||| || ||||| ||| Sbjct 27017 CTGGATAGAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTGTCCGACCACAGAC-CAA 27075 Query 138474 CTTGATCAAG-TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTC 138532 | | |||| ||| | || | ||| | ||||| || ||||| ||||| || | Sbjct 27076 GGTCAACAAGATCGCGAAGCAACCAAGGGTTGACAACCTGGAACTCACCAGCCAACACAC 27135 Query 138533 GACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAG 138592 | || ||||||||| ||| ||||||| || | |||||||| ||||||||||||| Sbjct 27136 GGCGCTGGTAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGAG 27195 Query 138593 CCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGA 138652 || | ||| || |||||| ||||| | || || || || | ||||| |||||| Sbjct 27196 AAGTTGACGCAGTGGGCATGGGCGCCAGAAGCAGCGAGTTGCGAACACCGTTCTGCTTGA 27255 Query 138653 TTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGT 138712 | | ||||| | || ||| ||||||| || || || | | |||||| ||| Sbjct 27256 TCTGCTCCTTCAAAGAGTTCCAATCCCACAGGTCACTGGGGGTGACATCCCACATGTCGA 27315 Query 138713 ACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCA--AACTC 138770 |||| | || ||| | | ||| || ||||||| ||| ||| ||| Sbjct 27316 ACTGAAGGATACCCTGAGAAACAGGAGATCCCTCGTACGTCGAGTAAGTACCTTCAACAG 27375 Query 138771 TTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTG 138830 ||| | ||| ||||| || ||| | | |||||| || || ||||||| Sbjct 27376 CAGCGATA--TCGCACGAAGCCTCCAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTT 27433 Query 138831 ATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGC 138890 |||||| || |||||||| ||| | ||||| || || | |||||| ||||| Sbjct 27434 GTTGAGCTGACGAGCCTCGGCAGACTCAAAAGGCATACGAAGGGCCAGGAACGCATCGGC 27493 Query 138891 CAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTC 138950 ||| || || || || || || | || || || |||| || || || | ||| || Sbjct 27494 CAGACCCTGAACACCAACACCAATGGGACGGTGACGCATGTT--ACTGTTCCG-GGCCTC 27550 Query 138951 GATA---GGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGT 139007 || | || || | ||| ||||| ||||| ||| || || || || || ||||| || Sbjct 27551 GACAACAGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGACAACAACCTTGGT 27610 Query 139008 CGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAA 139066 || | | | | | | || ||||| | ||||| | | | || |||| Sbjct 27611 GACAT-CGTGCAGCTTCTGGAAGTCGTAG------CAGTTGTTGGTGTAG---TCAACAA 27660 Query 139067 ATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATT 139126 | || | || ||| || | ||||||||| || || || || || ||| ||| | Sbjct 27661 AGGCAGGGAGAGCAAGCGATGCCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGTACT 27720 Query 139127 CGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTT 139186 ||| ||| || | || | || || || || || | || | ||| || || | Sbjct 27721 CGATAATCTCAGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTTTGGTTACTCT 27780 Query 139187 TTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTA 139246 | ||||| || ||| ||||| | ||| | || | ||||| ||| || | || | Sbjct 27781 TGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCA 27840 Query 139247 TAATGAATTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGT 139306 |||| | ||| | | ||| | || | | | | || | || |||||| Sbjct 27841 GAATGGCATACCACAGCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCCTGCTCGT 27900 Query 139307 ACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGT 139366 |||| |||| || | |||||| ||||||||| |||| | | | |||| || Sbjct 27901 ACTTGACGTAAAGAGCCTCGAATTCCTCACCGTAGCAATCAGCCAAGCCAGGGCACTCGT 27960 Query 139367 CAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAA 139426 || |||||||| | |||| |||||||| || || ||| ||||||||| || || | Sbjct 27961 TGGGGCACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAGTCAGGGA 28020 Query 139427 TCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTC- 139485 |||||| || | | ||||||||| || | || ||| ||| ||| || | Sbjct 28021 TCCACAGGGCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTC--TTCCG 28078 Query 139486 -ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC 139544 | || |||||| ||||| || ||||||||||| || ||||| || ||||| | || || Sbjct 28079 AAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACC 28138 Query 139545 TTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACAT 139601 || |||||||| |||||||||| || ||| || ||||| || |||| ||| Sbjct 28139 AGGACGCTTGTTGCCACCCTGATCGACGTAACGGGCAGTGTTGTTGAACACACGCAGCAT 28198 Query 139602 CGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATG--GGA--CTGTTGCGAGC 139655 || | | |||| ||| || ||||| |||| ||| ||| ||| | || ||| Sbjct 28199 AGGAACAATACCGTTCGAGGTACCGTTAGTGC--CGGCAATGTAGGAACCAGT----AGC 28252 Query 139656 TCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-AT 139714 |||| || || |||| ||||| || || | | ||||| || | | | || | Sbjct 28253 ACGGATACGGTGAACGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGT 28312 Query 139715 CGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATG 139774 | | | || || || |||||| || ||||| |||| ||| |||| ||||| | Sbjct 28313 CTTG-AGGGTATCATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGG 28371 Query 139775 ACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACA 139834 | ||||| || || | || ||||| || || |||||| ||||| ||||| | Sbjct 28372 AAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGA 28431 Query 139835 TTTGTTTCGACATCAATTCGTACGTTTC--GATGGCGCTC-ACAATATCCCTTCCGTGGA 139891 | ||||||| | | ||| ||||| || ||||| ||| |||| || || Sbjct 28432 ACTTGCTCGACATGAGGTTGTAAGTTTCCAGAACACGCTCAACATTATC---ACCCCAGA 28488 Query 139892 TACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAttt 139951 ||||||||| || ||||| | ||| || || || ||| | | | ||| || | | Sbjct 28489 TACCGACAGCAACACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCT 28548 Query 139952 ttttCAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 | || ||| | || |||||||| | ||||||||| |||||||| || Sbjct 28549 TGAGAAGGTAAGATCTTTCCAGGGTCTTAAATCCAAAGTACTGGTAGTTGAAGTC 28603 >seq6394 Length=53086 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || ||||| || || || || | | Sbjct 6556 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATTACCCTTGAGGTCGAGTCTTCT 6497 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || ||||| || || Sbjct 6496 GATACCATTGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 6437 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||||||||||| | | | |||| || || ||| Sbjct 6436 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGTACCCTGTCTGACTACAAC 6377 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| || || || ||| |||| Sbjct 6376 ATCCAGAAGGAGTCTACCCTCCACCTGGT 6348 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || || || || || | Sbjct 7240 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCT 7181 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || || || || || || ||||| || || Sbjct 7180 GACACCATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCGGACCAG 7121 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||||||||||| | | | | || || || ||| Sbjct 7120 CAGCGTCTTATCTTTGCGGGTAAGCAGCTGGAGGACGGCCGTACCCTTTCCGACTACAAC 7061 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || || ||||| || || || ||| Sbjct 7060 ATCCAGAAGGAGTCTACTCTCCAC 7037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449860809623760