Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq6529 129 9e-24 seq6404 120 5e-21 seq6225 96.9 5e-14 seq6538 87.8 3e-11 >seq6529 Length=132804 Score = 129 bits (142), Expect = 9e-24 Identities = 236/336 (70%), Gaps = 21/336 (6%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCT-AAAG-CAGAGGCCGGGCATGAGGCCGCGC 794397 ||| || || ||| ||| | |||||| |||| |||| |||||||| | || ||| Sbjct 77325 ACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAGA--CCGGGCATCATACCACGC 77382 Query 794398 TTCTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 794454 || ||||| ||||| |||| ||| || ||||| ||||| ||||| || ||| Sbjct 77383 TTGCGCAGCCAGAAGATAGAGGCA---AAAGCACCAGAGAAGAAGATACCCTCAACAGCG 77439 Query 794455 GCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTG---ATCCACTTC 794511 |||||| | || || |||| ||||||||| | | ||| |||| ||||||||| Sbjct 77440 GCAAAGGCAACCAGACGCTGGGCAAAAGT--CGA----CTCCTTGTCAGCAATCCACTTC 77493 Query 794512 ATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTG- 794570 | ||||| || ||||| | | |||| | ||||| |||||| ||||||| Sbjct 77494 AGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAATAGTGTCAATGGCGTTGAAGAGGTAT 77553 Query 794571 GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTG 794630 || | || | || ||||||| ||||||||| || || | ||||||||||| ||||| Sbjct 77554 GTGCG-CTGAGCAGGCTCCTTGATGTAGGTGTCAATCAGCAAAGAGTAGGTCTCCGAGTG 77612 Query 794631 GATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 |||||| || || ||||||||| || || ||||| Sbjct 77613 GATGTTCTCCATCATGATCTGGAAACCGTAGAAGCA 77648 Score = 100 bits (110), Expect = 5e-15 Identities = 177/257 (69%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || || || || ||| |||||| ||||||||||| || | || Sbjct 77004 GACACCAGCCTTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTTCCACCAAG 77063 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011 ||||| |||||| | ||| ||||||| | | ||| ||| ||| ||||| Sbjct 77064 GGAGATGTTCTCCATAAAGTCGAAGGGGTTGGAGGCCTTGTACACCTTGTCGTTACCGAG 77123 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 | | || || |||||||||||||| || || || ||||||| | |||||||| Sbjct 77124 AGCGACCAGAAGACGGTCGGCGACGAACTCGATATAGGTCTTCATGAGGTCAGCGTTCAT 77183 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 |||| || || ||| || | |||| | | ||||| ||||| || ||||||| || Sbjct 77184 ACCGAGAAGAGCGCAGGGAAGAGCCTCGGTAAGGAACTCCTTCTCAATGACGACGGCATC 77243 Query 794132 GATGATGATCTGCCTGG 794148 ||||||| | ||||| Sbjct 77244 AGTGATGATGT-CCTGG 77259 Score = 95.1 bits (104), Expect = 2e-13 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 796297 AGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 ||||| | ||||||||||||||| || |||||||||||||| |||||||| | ||| ||| Sbjct 77803 AGGTCAATCTCCTCGGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCAGATC 77862 Query 796357 CGTTGGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 ||||| ||| ||||| || || || || |||||||| || | || || || ||| Sbjct 77863 TCGTGGTACTTGATAGGGAAGAGCACGAAACGGTTGGGGTTTTCCTGAAGGAGGGGTTCG 77922 >seq6404 Length=55145 Score = 120 bits (132), Expect = 5e-21 Identities = 89/104 (86%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||| || ||||||||||| || || | || ||||||||||| |||||| | | Sbjct 20293 CCAACTACCTGGATATCAAGCCCCTTCTTGACGTTGGATGCAAGACCGTCGCCAACATGA 20234 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATC 2035754 |||||||||||||||| ||||| || ||||||||||| |||||| Sbjct 20233 TCAAGGGCAAGTCGCCGGAGGAAATTCGCAAGACCTTCAACATC 20190 >seq6225 Length=28432 Score = 96.9 bits (106), Expect = 5e-14 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 2411383 AGATCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGC 2411442 ||||| |||||||| || ||| || ||||||||||| | || ||| || || Sbjct 1101 AGATCGATCTTGGACTTGGGGTCGGAGGAACTCATCTTGCCACC---GGAGAGACCAGGG 1157 Query 2411443 ACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGC 2411502 |||| ||||| | || |||| ||| || | |||||||| |||| |||| || Sbjct 1158 ACCATTGGGTTCATCAAGTGGCAGCGGTTCTTGAAGCCCAGCTTGGGCATAGCGTCGTGC 1217 Query 2411503 GCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGC 2411562 | | |||||||||||||||| || | || || |||| |||||| || |||||| | Sbjct 1218 GACAGACCAAAGATCTTGCGCTGATCAAGACCACCGAACTCGGCGTCAACACCGAGGTAC 1277 Query 2411563 TGCTCGTCGAGGGCCTGCATGAGCGGGTA 2411591 | |||||| | ||||||||| ||||| Sbjct 1278 TCCTCGTCCAAAAGCTGCATGAGTGGGTA 1306 >seq6538 Length=177001 Score = 87.8 bits (96), Expect = 3e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||| ||||| || ||||||||| ||||||| || || | | Sbjct 24625 GTACTTGGTAACGGCCTTGGTGCCCTCAGAAACGGCGTGCTTGGCCAGCTCACCAGGAAG 24566 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 ||| || || || | |||||||||||| | || | ||| ||| Sbjct 24565 GATGAGACGGACAGAGGTCTGGATCTCTCTGGAGGAGATGGTG 24523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915550497621938