Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq6498 194 2e-44 seq6394 147 2e-30 seq6529 118 1e-21 seq6490 113 4e-20 seq6283 96.9 3e-15 >seq6498 Length=96284 Score = 194 bits (214), Expect = 2e-44 Identities = 1118/1763 (63%), Gaps = 63/1763 (4%) Strand=Plus/Plus Query 148047 TTAAACGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT- 148103 || |||||||| ||| ||||| || || |||||||| || ||||| | || | || Sbjct 26892 TTCAACGACTGAGACTGATCAATAAAGGCACCACGGTCGGCAGCCATCTGAACAACAGTA 26951 Query 148104 CGCTTTATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCG 148163 |||| |||||||| | |||||||| || |||||| | | ||||||| | Sbjct 26952 CGCTGAGAA---ATCTCCCAAACAGTCTTGTAAAGAGACTTGATGTCCGCCGGAATGCTG 27008 Query 148164 TCGATGCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTAT 148223 |||| ||| | || ||| || || || || | || ||| | ||||| | Sbjct 27009 GGGATGTTCTGGATAGAACCGTTGTCCGAAATGATGCGGTTCTTCATGTTGTCCGACCAC 27068 Query 148224 AGGTTGAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCG 148283 || || || | || || | || | | || || ||||| ||||| || || Sbjct 27069 AGACCAAGGTCAACAAGATCGCGAAGCAACCAAGGGTTGACAACCTGGAACTCACCAGCC 27128 Query 148284 AGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAA 148343 | ||| || ||| | || | ||| || | || || || |||||||||| |||| | Sbjct 27129 AACACACGGCGCTGGTAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGA 27188 Query 148344 ATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGA 148403 ||||| | || | || ||||||||| ||| | |||||||||||||| | |||| Sbjct 27189 ATCTGAGAAGTTGACGCAGTGGGCATGGGCGCCAGAAGCAGCGAGTTGCGAACACCGTTC 27248 Query 148404 TTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGAC--GGTGTCACGTTCC 148461 | || || | ||||| || ||| ||||| | || || || || || | || Sbjct 27249 TGCTTGATCTGCTCCTTCAAAGAGTTCCAATCCCACA--GGTCACTGGGGGTGACATCCC 27306 Query 148462 ACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTC 148521 |||||||| |||| || || || | | | || |||||||||| ||| | | Sbjct 27307 ACATGTCGAACTGAAGGATACCCTGAGAAACAGGAGATCCCTCGTACGTCGAGTAAGTAC 27366 Query 148522 CGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAA 148581 | | | || || | ||||| ||||| || || ||| |||||| ||||| | Sbjct 27367 CTTCAACAGCAGCGATATCGCACGAAGCCTCCAGGGCAGCGTGGTAAATGGTCTCAAAGA 27426 Query 148582 TTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACG 148641 | ||| |||||||| | ||| | || | |||||||| || || |||| Sbjct 27427 TCTGCTTGTTGAGCTGACGAGCCTCGGCAGACTCAAAAGGCATACGAAGGGCCAGGAACG 27486 Query 148642 CGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCG 148701 | ||||| || ||||| || || || |||||||| ||||| ||||| | || | Sbjct 27487 CATCGGCCAGACCCTGAACACCAACACCAATGGGACGGTGACGCATGTTACTGTTCCGGG 27546 Query 148702 CGCTC-TCGAGCGGATAGTGGTTGCGGTCGATGAT-CTTGTCAAGATTGCGCACCACCAC 148759 | ||| | | || |||||||| || ||||| | ||||| ||||| || || || Sbjct 27547 C-CTCGACAACAGGGTAGTGGTTCACATCAATGATACGGTTCAAG-TTGCGGACAACAAC 27604 Query 148760 CTTTGTAATTCTGCGCAGCAATTCAAAATCGT---ACTTG-TCATCTACGATGCATCGGT 148815 ||| || | | ||||| | || |||| | ||| | | || || || Sbjct 27605 CTTGGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAGTTGTTGGTGTAGTCAACAAAGG- 27663 Query 148816 TCACG----GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCT 148871 || | || | || || | |||||||| || |||||| || |||| |||||| Sbjct 27664 -CAGGGAGAGCAAGCGATGCCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGTACTCG 27722 Query 148872 ACGATCTCGGCGCACAGATTG---CTGC-ATTTGATCACGCCCACGTTCTTTTGATTGCT 148927 | ||||| | ||| || ||| |||| | | | | |||| ||||||||| || || Sbjct 27723 ATAATCTCAGTGCAAAGGTTGGAACTGCGAATAGTT----CCCAGGTTCTTTTGGTTACT 27778 Query 148928 CTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTC 148987 ||||| |||||| |||||||||| |||| | || ||||| ||| ||| | ||| Sbjct 27779 CTTGCGGTTGCAGTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTC 27838 Query 148988 CACTATG--AACCGATGCAGGTCCTGCGCGCGCACTTGCTGCT-----CGTAGCGACCCT 149040 || ||| | | | ||| | ||| || |||| || | | || || | Sbjct 27839 CAGAATGGCATACCA--CAGCTTCTGAGC-----CTTGATGGTAAGACGGCCACGTCCTT 27891 Query 149041 CCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACC 149098 |||||||||| | | ||| | ||| |||||| |||| ||||||||||| | | || Sbjct 27892 CCTGCTCGTACTTGACGTAAAGAGC--CTCGAATTCCTCACCGTAGCAATCAGCCAAGCC 27949 Query 149099 GGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAA 149158 ||||||| || ||||||||||| | ||| |||||| | | || |||||||| || Sbjct 27950 AGGGCACTCGTTGGGGCACATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAA 28009 Query 149159 CAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGC-AGTCT--TCGGCGCC 149215 || || || | ||| || || | | ||||| || || | ||| || || Sbjct 28010 CAAGTCAGGGATCCACAGGGCAAGGAACAAATCGCGAGC---GCGAATCTCCTCCTTACC 28066 Query 149216 CATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACAC 149275 ||| || |||| || | || | || |||||||||||||| | ||| | Sbjct 28067 GTGGTTCTTCCGAAGGTCAAGGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAAT 28126 Query 149276 CGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAA 149332 || | || || ||| ||||| ||||| ||||||| || | ||||||| || Sbjct 28127 GGCAAAAGCACCAGGACGCTTGTTGCCACCCTGATCGACGTAACGGGCAGTGTTGTTGAA 28186 Query 149333 CACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCC 149392 ||| || | |||||| |||| || | | || |||||||| | |||| || Sbjct 28187 CACACGCAGCATAGGAACAATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAGGAACC 28246 Query 149393 GCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCC-GCCGCCGTACTTTGAGATGGCCG 149451 || || | ||| ||||||| ||||| || ||||| | ||| ||||| | Sbjct 28247 AGTAGCACGGATACGGTGAACGTTGAGACCGATACCACCCGCCAT-CTTGGAGATCATAG 28305 Query 149452 CGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAA 149511 | ||| ||| || ||||| || ||||| ||||| ||||||| | || | Sbjct 28306 CACAGGTCTTGAGGGTATCATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGA 28365 Query 149512 AGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTG 149571 |||| || | | || || | | || ||||| ||| | ||| || |||||| | Sbjct 28366 AGCAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAG 28425 Query 149572 T-AAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCA 149630 | || | || || | ||| | | ||| | || || || || || | | ||| || Sbjct 28426 TGAAGAACTTGCTCG-ACATGAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCC 28484 Query 149631 TGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCA 149690 ||| || | || || ||||| | ||| ||||| || ||||| | | ||| || Sbjct 28485 CAGATACCGACAGCAACACGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCA 28544 Query 149691 ATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCG 149750 | ||||| | ||| |||| || ||||| | |||||||||| ||||| ||||| Sbjct 28545 AGCTTGAGAAGGTAAGATCTTTCCAGGGTCTTAAATCCAAAGTACTGGTAGTTGAAGTCA 28604 Query 149751 CGGCCGTGGTCAATGGCGGCGTC 149773 ||| | | | | ||||| | ||| Sbjct 28605 CGGTCATAGACGATGGCCGAGTC 28627 >seq6394 Length=53086 Score = 147 bits (162), Expect = 2e-30 Identities = 153/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||||||| | ||| | | | ||||||||||||||||| Sbjct 6816 GTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCA-TCCTCGAGCTGCTTGCC 6874 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || ||||||||||| || ||||| || |||||||| |||||| ||| Sbjct 6875 AGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTT 6934 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| || |||| || ||| || |||| ||| | ||| || |||||||| || Sbjct 6935 GACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTAATGGTCTTTCCGGTCAGGGT 6994 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 6995 CTTGACGAAAATCTGCAT 7012 Score = 127 bits (140), Expect = 2e-24 Identities = 134/174 (77%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||||||| | ||| ||| | ||||| ||||||||||| Sbjct 7272 GTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGACCA-TCCTCAAGCTGCTTGCC 7330 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || ||||||||||| || ||||| || |||||||| |||||| ||| Sbjct 7331 AGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTT 7390 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | |||| || |||| || ||| || |||| ||||| ||| |||||||| Sbjct 7391 GACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGGT 7444 Score = 122 bits (134), Expect = 8e-23 Identities = 148/200 (74%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || ||||| || || || |||| |||||| |||||||| Sbjct 6359 GGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGT--ACGACCGTCCTCCAGCTGCTTA 6416 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || || | || || ||||||||||| ||||||||||| |||||||| |||||| | Sbjct 6417 CCAGCAAAGATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTC 6476 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | |||| || || | | ||| || || | ||| | ||| || ||||||||| Sbjct 6477 TTGACGTTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTTCCGGTCAGA 6536 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| Sbjct 6537 GTCTTCACGAAGATCTGCAT 6556 Score = 105 bits (116), Expect = 6e-18 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| ||| | || ||| |||||| |||||||| | Sbjct 7044 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGT--ACGGCCGTCCTCCAGCTGCTTAC 7101 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 |||| | || || ||||||||||| |||||||| || ||||| || ||||| || Sbjct 7102 CCGCAAAGATAAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGAATCTTCGACT 7161 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | || ||| || || | |||| ||| ||||| ||||||| Sbjct 7162 TGACGTTGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGTCTTGCCAGTCAGAG 7221 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 7222 TCTTGACAAAGATCTGCAT 7240 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || ||||| || | | | | ||| ||||| |||||||| Sbjct 6587 GGTAGACTCCTTCTGAATGTTGTAGTC--CGAGAGAGTACGGCCATCCTCAAGCTGCTTA 6644 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| |||| || ||||| ||||| || || || || |||||||| ||||| | Sbjct 6645 CCAGCGAAAATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGAC 6704 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | || | || || | | ||| || || | ||| | || || |||||||| Sbjct 6705 TTAACATTGTCGATGGTATCCGACGACTCGACCTCAAGGGTAATTGTCTTTCCGGTCAGG 6764 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || |||||||||||||| Sbjct 6765 GTCTTGACGAAAATCTGCAT 6784 >seq6529 Length=132804 Score = 118 bits (130), Expect = 1e-21 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||||||||| || ||||| || || || || ||||||||| || ||| Sbjct 77302 AGGCAGGCAAAGTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTC 77361 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTG---ATGTAGAATATGGCGGCAAAGCTGCCCGAA 120756 || |||||||| || || || |||| | |||| || | |||||| || || Sbjct 77362 AGACCGGGCATCATACC--ACG-CTTGCGCAGCCAGAAGATAGAGGCAAAAGCACCAGAG 77418 Query 120757 AAGAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTG 120816 ||||| | ||||| || ||||||||| |||| |||| ||| || |||| | |||| Sbjct 77419 AAGAAGATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCAAAAGTCGACTCCTTG 77478 Query 120817 CTGTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 | |||||||||| |||||| |||||||| ||| | ||| || || Sbjct 77479 TCAGCAATCCACTTCAGGGCCCAGTCGGCCTTGCGGCGAATGCAGGGAAT 77528 >seq6490 Length=90610 Score = 113 bits (124), Expect = 4e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||||||||| ||| |||| || ||||||||||| || || ||||| |||||| Sbjct 85249 TCCTCCAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTG 85190 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | |||||| | || ||| || || | ||||| Sbjct 85189 TCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATC 85130 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || || |||||||||||||| Sbjct 85129 GTCTTACCCGTAAGGGTCTTAACGAAAATCTGCAT 85095 >seq6283 Length=33863 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || || ||| | | | ||||| ||||||||||| Sbjct 31255 GTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCA-TCCTCAAGCTGCTTGCC 31197 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || ||||| ||||| || || || || |||||||| |||||| ||| Sbjct 31196 AGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGGATCTTGGACTT 31137 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || || | ||||| ||| || || ||||| || Sbjct 31136 GACGTTGTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTACCCGTCAGGGT 31077 Query 133643 TTTTACGAAA 133652 || |||||| Sbjct 31076 CTTGACGAAA 31067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483381268264080