Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6394 116 3e-21 seq6490 113 4e-20 >seq6394 Length=53086 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || |||| |||||||||||||| ||||| Sbjct 6365 CTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTCCTCCAGCTGCTTACCAGCAAA 6424 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| ||| | || |||||||||| |||||| ||| | || Sbjct 6425 GATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTGA-CGT 6483 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | || || || || ||||| | || || || || || |||| ||| |||| Sbjct 6484 TGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCA 6543 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 6544 CGAAGATCTGCAT 6556 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || |||| |||||||||||||||||||| Sbjct 7049 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTCCTCCAGCTGCTTACCCGCAAA 7108 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| ||| | | |||||| ||| ||||| ||| | || Sbjct 7109 GATAAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGAATCTTCGACTTGA-CGT 7167 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| || || ||||| | ||||| || || || |||| ||| || | Sbjct 7168 TGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGTCTTGCCAGTCAGAGTCTTGA 7227 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 7228 CAAAGATCTGCAT 7240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||||| | ||| || | || || |||||||| || || || Sbjct 6821 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAA 6880 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| || | | |||||||||| |||||| ||| | | | Sbjct 6881 AATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATT 6940 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| || || ||||| | || || || || || |||| || || || Sbjct 6941 GTCAATGGTATCGGAGGACTCAACCTCGAGGGTAATGGTCTTTCCGGTCAGGGTCTTGAC 7000 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 7001 GAAAATCTGCAT 7012 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | | || || | || || ||||||||||| || || Sbjct 6593 CTCCTTCTGAATGTTGTAGTCCGAGAGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAA 6652 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||| ||||||| |||| | |||||||||| ||||| ||| | | | Sbjct 6653 AATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGACTTAACATT 6712 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || ||| || ||||| | || || || || || |||| || || || Sbjct 6713 GTCGATGGTATCCGACGACTCGACCTCAAGGGTAATTGTCTTTCCGGTCAGGGTCTTGAC 6772 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 6773 GAAAATCTGCAT 6784 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||||| | ||| || | || || |||||||| || || || Sbjct 7277 CTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAA 7336 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 |||| ||||||||||||| || | | |||||||||| |||||| Sbjct 7337 AATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTT 7384 >seq6490 Length=90610 Score = 113 bits (124), Expect = 4e-20 Identities = 141/191 (74%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| || | | ||| || | || ||||||||||| || || || | Sbjct 85284 CCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAA 85225 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||||| |||| || |||||||||| |||||| ||| | |||| Sbjct 85224 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 85166 Query 35667 -CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| || || ||||| | |||||||| |||||||| | || || || Sbjct 85165 TCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACG 85106 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 85105 AAAATCTGCAT 85095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450756736353360