Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6498 147 3e-30 >seq6498 Length=96284 Score = 147 bits (162), Expect = 3e-30 Identities = 551/854 (65%), Gaps = 24/854 (3%) Strand=Plus/Plus Query 69352 ATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAAC 69411 ||||| ||||| || | || |||||||| ||| ||| |||||||| | || || Sbjct 27753 ATAGTTCCCAGGTTCTTTTGGTTACTCTTGCGGTTGCAGTGATCCTTGTACAACATGAAA 27812 Query 69412 GGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATT 69471 || ||||||| || |||||| ||| | ||| | | ||| | | ||| || || Sbjct 27813 GGGTTACCAGTCTCCGTCTGAGCTTCCAGAATGGCATACCACAGCTTCTGAGCCTTGATG 27872 Query 69472 -----ACGGTCTTGTAACGCTTCTCTTTTTCATA-TTGT-GTATATAGCCGTTCGAATTC 69524 |||| | || |||| | || || ||| ||| | |||| |||||||| Sbjct 27873 GTAAGACGGCCACGTC---CTTCC--TGCTCGTACTTGACGTAAAGAGCC--TCGAATTC 27925 Query 69525 ATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATC 69584 || || | |||| |||| ||||| || || || || ||||| | | ||| | | Sbjct 27926 CTCACCGTAGCAATCAGCCAAGCCAGGGCACTCGTTGGGGCACATGAGGGTCCATTCGCC 27985 Query 69585 ATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCT 69644 | | || ||| || ||||| || | || || ||||| || || | || | ||| | Sbjct 27986 GTTCTTCTCAACACGCTTCATGAACAAGTCAGGGATCCACAGGGCAAGGAACAAATCGCG 28045 Query 69645 GGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGA 69704 | | | | || || || || || || ||| || || ||||| | | ||||| Sbjct 28046 AGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGAAGGTCAAGGAACTCAAACACATCAGC 28105 Query 69705 ATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTAT 69764 ||||| || || || || || || | | || || || || || || |||||||| | Sbjct 28106 GTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGCTTGTTGCCACCCTGATCGAC 28165 Query 69765 GTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATT 69824 ||| | ||||||||| || | || | |||||| |||| |||||| || || |||| || Sbjct 28166 GTAACGGGCAGTGTTGTTGAACACACGCAGCATAGGAACAATACCGTTCGAGGTACCGTT 28225 Query 69825 TGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCC 69884 || || | ||| || || | || || ||| || ||||| || || || Sbjct 28226 AGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTGAACGTTGAGACCGATACCACC 28285 Query 69885 TGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATC 69944 ||||| || ||||| | |||||| || | || ||||| ||||| || || || || Sbjct 28286 CGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATCATAGATACCTTCGATACTGTC 28345 Query 69945 ATCTATCATGT-TAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAA 70003 || |||||| || ||||| ||| ||| | ||| | || || || || || | Sbjct 28346 CTCCTTCATGTCTACCAAGAAG-CAGGAAGAAAGCTGAGGCTGAGGGGTACCGGCGTTGA 28404 Query 70004 ATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAG 70063 | | |||||||| ||||||||||| | || || | || ||||| ||||| | | Sbjct 28405 AGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCGACATGAGGTTGTAAGTTTCCAGAA 28464 Query 70064 CTGATTCTA---TATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGA 70119 | || | |||| || | | || || | || |||||||| | ||| |||||| Sbjct 28465 CACGCTCAACATTATCACCCCAG----ATACCGACAGCAACACGCATAATCATGTGCTGA 28520 Query 70120 GGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAAC 70179 || || || || | || || | || | ||||| ||| ||||||| || ||||| Sbjct 28521 GGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGATCTTTCCAGGGTCTTAAAT 28580 Query 70180 CCAAAATAGTTGTA 70193 ||||| || | ||| Sbjct 28581 CCAAAGTACTGGTA 28594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686852628032880