Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6498 232 8e-56 seq6529 96.9 4e-15 >seq6498 Length=96284 Score = 232 bits (256), Expect = 8e-56 Identities = 941/1467 (64%), Gaps = 43/1467 (3%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||| ||||| | ||||| || || ||||| || || ||||||| || || | || | Sbjct 27142 GGTAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGAGAAGTTG 27201 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 | || || ||||| || |||| | || ||| |||| ||| |||| |||||| | | Sbjct 27202 ACGCAGTGGGCATGGGCGCCAGAAGCAGCGAGTTGCGAACACCGTTCTGCTTGATCTGCT 27261 Query 110826 CCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTG 110883 |||| | | | ||| || | | | | || || | || | |||||||||| ||||| Sbjct 27262 CCTTCAAAGAGTTCCAATCCCACAGGTCA-CTGGGGGTGACAT-CCCACATGTCGAACTG 27319 Query 110884 AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGC 110943 ||| | || || || | ||||| ||||| | || || | ||||| | |||| Sbjct 27320 AAGGATACCCTGAGAAACAGGAGATCCCTCGTACGTCGAGTAAGTACCTTCAACAGCAGC 27379 Query 110944 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 111003 | || || |||||||||| ||||| || ||||| |||||||| | || | Sbjct 27380 GATATCGCACGAAGCCTCCAGGGCAGCGTGGTAAATGGTCTCAAAGATCTGCTTGTTGAG 27439 Query 111004 CTCCTTGGCTTCATCTGAATCAAATG-----CGTAGCGGCACAAAATAAATACATCCGCG 111058 || || || | || ||||| | || || | || || |||| || Sbjct 27440 CTGACGAGCCTCGGCAGACTCAAAAGGCATACGAAGGGCCAGGAACG-----CATCGGCC 27494 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 ||||| |||||||| | |||||| || | ||| ||||| ||| || || || || Sbjct 27495 AGACCCTGAACACCAACACCAATGGGACGGTGACGCATGTTACTGTTCCGGGCCTCGACA 27554 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATT 111178 || || || || ||||||| ||||| | || | ||||| ||| |||| Sbjct 27555 ACAGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGACAACAACCTTGGTGACA 27614 Query 111179 TCATGAAGTTTTTCATAATCAAA--AGT-GCGAGTCTCTTCATTGACATACTTTGGAAGG 111235 || || || || | | || | ||| | || | ||| ||| | || || Sbjct 27615 TCGTGCAGCTTCTGGAAGTCGTAGCAGTTGTTGGTGTAGTCA---ACAAAGGCAGGGAGA 27671 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || | |||||||| ||||| ||||| |||||| | | |||||| | ||| || Sbjct 27672 GCAAGCGATGCCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGTACTCGATAATCTCA 27731 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || | ||||||||| ||| || |||| ||||||||||||||||| |||||| Sbjct 27732 GTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTTTGGTTACTCTTGCGGTTGCAG 27791 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 ||||||||| | |||| | || | || ||||||||||| | || ||||| || | | Sbjct 27792 TGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATGGCATAC 27851 Query 111416 CA-AACATCGGCGGCTGGTACAATGG--CGTTGGCC-CGTCCCTCCGCCTCGTACTTTGT 111471 || | | || | | || | |||| | |||| ||||| ||| ||||||||| Sbjct 27852 CACAGCTTCTGAGCCTTG----ATGGTAAGACGGCCACGTCCTTCCTGCTCGTACTTGAC 27907 Query 111472 GTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACA 111531 ||| || || || || |||||||| || | | || || || || || || Sbjct 27908 GTAAAGAGCCTCGAATTCCTCACCGTAGCAATCAGCCAAGCCAGGGCACTCGTTGGGGCA 27967 Query 111532 GAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 111591 | || | ||||| || | |||||| ||||||||||| | ||| || |||||||| Sbjct 27968 CATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAGTCAGGGATCCACAG 28027 Query 111592 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 || || | ||| | | ||| ||| || | ||| ||||| || | ||||| Sbjct 28028 GGCAAGGAACAAATCGCGAGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGAAGGTCAAG 28087 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACG 111711 |||||| | | ||| |||||||| ||||| || || | || | || || |||| Sbjct 28088 GAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACC---AGGACG 28144 Query 111712 C------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 | ||| | |||| || || || || ||| ||| || || || ||||| |||| Sbjct 28145 CTTGTTGCCACCCTGATCGACGTAACGGGCAGTGTTGTTGAACACACGCAGCATAGGAAC 28204 Query 111766 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 111825 |||||| | || ||| || || || ||| || | | || | | | || Sbjct 28205 AATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGGTG 28264 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 | || | || ||||| || ||| ||| ||||| ||||| | | || || | Sbjct 28265 AACGTTGAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGGTATC 28324 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 ||||||||| | ||| ||||||||| || | | | |||||| || | ||| || Sbjct 28325 ATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCTGAGG 28384 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGAC 112003 || ||||| || ||||||||||| || | |||||| ||| | | |||| ||| Sbjct 28385 CTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGA--AGAACTTGCTCGAC 28442 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 || || ||| || |||| ||| |||| | || || ||| |||| || || Sbjct 28443 ATGAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAGATACCGACAGCAACA 28502 Query 112064 CGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGAT-AGCT 112122 ||||| | ||||| ||| || || | | ||||||| ||| |||| | || | Sbjct 28503 CGCATAATCATGTGCTGAGGACGCTCGACAATCTTGCCATCAAGCTTGAGAAGGTAAGAT 28562 Query 112123 CTTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||| || ||||| || | |||||||| Sbjct 28563 CTT-TCCAGGGTCTTAAATCCAAAGTA 28588 >seq6529 Length=132804 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| ||| ||| ||||||||||| || || ||||| || || ||||| ||||| Sbjct 77307 GGCAAAGTCCGTGTGAAGACCCTCATCACGAGAGATAAGCTCGTTGGAGAAAGTCAGACC 77366 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | ||| ||||| || ||| | |||| | || | || ||||||||||| Sbjct 77367 GGGCATCATACCACGCTTGCGCAGCCAGAAGATAGAGGCAAAAGCACCAGAGAAGAAGAT 77426 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAA 122836 |||||| ||| ||||| |||| || || | ||| || | ||| | ||| || ||| Sbjct 77427 ACCCTCAACAGCGGCAAAGGCAACCAGACGCTGGGCAAAAG-TCGACTCCTTGTCAGCAA 77485 Query 122837 ACCATTTCATTGCCCATTTCGCCTT 122861 ||| |||| ||||| | ||||| Sbjct 77486 TCCACTTCAGGGCCCAGTCGGCCTT 77510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627980642683200