Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6498 233 2e-56 seq6529 129 7e-25 >seq6498 Length=96284 Score = 233 bits (258), Expect = 2e-56 Identities = 899/1396 (64%), Gaps = 37/1396 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | ||||| || || ||||||| || || | |||| ||| Sbjct 28522 CCTCAGCACATGATTATGCGTGTTGCTGTCGGTATCTGGGGTGATAATGTTGAGCGTGTT 28463 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 |||| || ||| || ||||| |||| | | ||| |||||| | || ||||||| Sbjct 28462 CTGGAAACTTACAACCTCATGTCGAGCAAGTTCT--TCACTCACGCCTCTCCTACCCTCT 28405 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || ||||| || || || | || |||||| | | | || ||||||| Sbjct 28404 TCAACGCCGGTACCCCTCAGCCTCAGCTTTCTTCCTGCTTCTTGGTAGACATGAAGGAGG 28345 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || ||| | |||||||||| || || | | ||||| ||||| ||| ||| | Sbjct 28344 ACAGTATCGAAGGTATCTATGATACCCTCAAGACCTGTGCTATGATCTCCAAGATGGCGG 28285 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | ||||| || | || | || | | | || | | || ||| || || | Sbjct 28284 GTGGTATCGGTCTCAACGTTCACCGTATCCGTGCTACTGGTTCCTACATTGCCGGCACTA 28225 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| || | |||||| |||| ||||| || || || ||| ||| || || || | Sbjct 28224 ACGGTACCTCGAACGGTATTGTTCCTATGCTGCGTGTGTTCAACAACACTGCCCGTTACG 28165 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | |||| | ||| ||||| || || | || | || || ||||| |||| Sbjct 28164 TCGATCAGGGTGGCAACAAGCGTCCT---GGTGCTTTTGCCATTTACCTGGAGCCGTGGC 28108 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG--GCGCG 104691 |||| ||| | | ||||||||||| | || ||||| ||| | |||||| |||| Sbjct 28107 ACGCTGATGTGTTTGAGTTCCTTGACCTTCGGAAGAACCACGGTAAGGAGGAGATTCGCG 28048 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 | |||||| | ||| || || ||||| || || | ||||||||| | |||||| | Sbjct 28047 CT--CGCGATTTGTTCCTTGCCCTGTGGATCCCTGACTTGTTCATGAAGCGTGTTGAGAA 27990 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || ||| | ||| | ||| | || || || || ||||| | | ||| | || Sbjct 27989 GAACGGCGAATGGACCCTCATGTGCCCCAACGAGTGCCCTGGCTTGGCTGATTGCTACGG 27930 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC--GGGCGACTGCGACG 104869 |||||| || || || |||||| ||||||||| | ||||| | || || || || Sbjct 27929 TGAGGAATTCGAGGCTCTTTACGTCAAGTACGAGCAGGAAGGACGTGGCCGTCT--TACC 27872 Query 104870 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 | | || | || | ||||| | || ||||| | |||| || |||||||||| || Sbjct 27871 AT-CAAGGCTCAGAAGCTGTGGTATGCCATTCTGGAAGCTCAGACGGAGACTGGTAACCC 27813 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | |||| | ||||| || ||| |||| |||||||| |||||||| |||| || Sbjct 27812 TTTCATGTTGTACAAGGATCACTGCAACCGCAAGAGTAACCAAAAGAACCTGGGAACTAT 27753 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 |||||||| || || || || || | || | | |||||| ||||| Sbjct 27752 TCGCAGTTCCAACCTTTGCACTGAGATTATCGAGTACTGCGCTCCTGATGAGGTCGCTGT 27693 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 105107 ||| ||| | ||||| | |||||||| | ||| || | || |||| | | | Sbjct 27692 GTGCAACTTGGCATCGCTTGCTCTCCCTGCCTTTGTTGACTACACCAACAACTGC-TACG 27634 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | | || || ||||| || || || ||| | ||| | ||| | | |||| Sbjct 27633 ACTTCCAGAAGCTGCACGATGTCACCAAGGTTGTTGTCCGCAACTTGAACCGTATCATTG 27574 Query 105168 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 || || ||||| |||| || || || ||| ||| | |||||||| |||| Sbjct 27573 ATGTGAACCACTACCCTGTTGTCGAGGCCCGGAACAGTAACATGCGTCACCGTCCCATTG 27514 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATT 105284 || | |||||||||||||| || |||| ||| | ||| || | | ||||| | Sbjct 27513 GTGTTGGTGTTCAGGGTCTGGCCGATGCGTTCCTGGCCCTTCGTATGC---CTTTTGAGT 27457 Query 105285 CCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTG 105344 | | ||| || | |||| || || ||||||||||| || ||||| || || | Sbjct 27456 CTGCCGAGGCTCGTCAGCTCAACAAGCAGATCTTTGAGACCATTTACCACGCTGCCCTGG 27397 Query 105345 AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404 |||| | || | || | ||||| ||| | || || | ||||| ||||| | Sbjct 27396 AGGCTTCGTGCGATATCGCTGCTGTTGAAGGTACTTACTCGACGTACGAGGGATCTCCTG 27337 Query 105405 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCAC---TACG 105461 ||| || || | ||||| || || ||||||| | || | || || | || | | Sbjct 27336 TTTCTCAGGGTATCCTTCAGTTCGACATGTGGG-ATGTCACCCCCAG--TGACCTGTGGG 27280 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 | ||| | || | ||||| | |||||| |||| ||| |||| ||| || || ||| Sbjct 27279 ATTGGAACTCTTTGAAGGAGCAGATCAAGCAGAACGGTGTTCGCAACTCGCTGCTTCTGG 27220 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 | || ||||| || || || || | || || ||||||| || || ||||| || || | Sbjct 27219 CGCCCATGCCCACTGCGTCAACTTCTCAGATTCTGGGTAACAACGAGTGCTTCGAGCCTT 27160 Query 105582 ACACGACGAACATCTA 105597 |||| ||||||| || Sbjct 27159 ACACTTCGAACATTTA 27144 >seq6529 Length=132804 Score = 129 bits (142), Expect = 7e-25 Identities = 212/303 (70%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 94656 GGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCT 94715 |||||| ||| | || || |||| || || ||||| |||| || | | || Sbjct 77607 GGAGACCTACTCTTTGCTGATTGACACCTACATCAAGGAGCCTGCTCAGCGCACATACCT 77548 Query 94716 CTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTG 94775 ||| | ||||| | || |||| || |||| || || || ||||| ||||||| Sbjct 77547 CTTCAACGCCATTGACACTATTCCCTGCATTCGCCGCAAGGCCGACTGGGCCCTGAAGTG 77488 Query 94776 GTTTGAT-ACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832 | ||| | |||| ||||| || |||| |||| || | || ||||| |||||| Sbjct 77487 GATTGCTGACAAGGAGTCGACTT---TTGCCCAGCGTCTGGTTGCCTTTGCCGCTGTTGA 77431 Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892 ||||||||||||||||||| | || | |||| | ||||| ||||| ||| | || Sbjct 77430 GGGTATCTTCTTCTCTGGTGCTTTTGCCTCTATCTTCTGGCTGCGCAAGCGTGGTATGAT 77371 Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 94952 ||| ||||| |||||||||||||||||||||||||| ||||| || ||| || || Sbjct 77370 GCCCGGTCTGACTTTCTCCAACGAGCTTATCTCTCGTGATGAGGGTCTTCACACGGACTT 77311 Query 94953 TGC 94955 ||| Sbjct 77310 TGC 77308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583213103848080