Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6498 237 2e-57 seq6519 143 3e-29 seq6529 91.5 2e-13 >seq6498 Length=96284 Score = 237 bits (262), Expect = 2e-57 Identities = 365/517 (71%), Gaps = 4/517 (1%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| ||| || |||||| | || ||||| |||||||| ||||| ||| |||||| | Sbjct 28435 AAGTTCTTCACTCACGCCTCTCCTACCCTCTTCAACGCCGGTACCCCTCAGCCTCAGCTT 28376 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || ||||||| |||| | |||||||| ||| ||||| || ||||| || || ||| Sbjct 28375 TCTTCCTGCTTCTTGGTAGACATGAAGGAGGACAGTATCGAAGGTATCTATGATACCCTC 28316 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGT- 53445 ||| ||||| ||||||||| | |||||||||||||| || || | || | ||| Sbjct 28315 AAGACCTGTGCTATGATCTCCAAGATGGCGGGTGGTATCGGTCTCAAC-GTTC-ACCGTA 28258 Query 53446 -CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTA 53504 |||||| | || | || || || ||||| | | | || || || |||| Sbjct 28257 TCCGTGCTACTGGTTCCTACATTGCCGGCACTAACGGTACCTCGAACGGTATTGTTCCTA 28198 Query 53505 TGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGG 53564 |||| || || ||||||||||| ||||| |||||| | |||||||| ||||| | Sbjct 28197 TGCTGCGTGTGTTCAACAACACTGCCCGTTACGTCGATCAGGGTGGCAACAAGCGTCCTG 28138 Query 53565 GGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGC 53624 | | || ||||| ||||| |||||||||||||| || | | ||||| || || || | Sbjct 28137 GTGCTTTTGCCATTTACCTGGAGCCGTGGCACGCTGATGTGTTTGAGTTCCTTGACCTTC 28078 Query 53625 GTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTC 53684 | ||| || ||| | || ||||| ||| || || |||| || |||||||| | Sbjct 28077 GGAAGAACCACGGTAAGGAGGAGATTCGCGCTCGCGATTTGTTCCTTGCCCTGTGGATCC 28018 Query 53685 CGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG 53744 | ||| | |||||| | || |||||| ||| || ||| ||| |||||||| |||| Sbjct 28017 CTGACTTGTTCATGAAGCGTGTTGAGAAGAACGGCGAATGGACCCTCATGTGCCCCAACG 27958 Query 53745 AGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 ||||||| ||| | | | |||||||||||| || Sbjct 27957 AGTGCCCTGGCTTGGCTGATTGCTACGGTGAGGAATT 27921 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 55737 TTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTG 55796 ||||| ||| || ||||||||| | ||| | | | || | ||| ||| || |||| Sbjct 26982 TTTACAAGACTGTTTGGGAGATTTCTCAGCGTACTGTTGTTCAGATGGCTGCCGACCGTG 26923 Query 55797 GTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCA 55856 |||| | || || ||||| ||||| ||||||| |||| || | || | ||| || Sbjct 26922 GTGCCTTTATTGATCAGTCTCAGTCGTTGAACATTCACATGAAGGACCCAACCATGGGCA 26863 Query 55857 AGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATC 55916 || | | | ||||||||| || |||||| || |||||||||||||||||||| | Sbjct 26862 AGATTACCAGCATGCACTTTGCGGGTTGGAAGCTTGGTCTCAAGACGGGTATGTACTACC 26803 Query 55917 TGCGGACCC 55925 |||| |||| Sbjct 26802 TGCGTACCC 26794 >seq6519 Length=116256 Score = 143 bits (158), Expect = 3e-29 Identities = 198/275 (72%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 ||||||||| ||| ||||||| |||||||| |||||||||||||| | |||| Sbjct 62048 AGGCGAGTGTGAATATAACGAGCCGAGGCAGCATCTGAACCACCAGCAAGACGAGAACCG 61989 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | ||||| || |||| | || | |||||| | || ||||||| ||||| | Sbjct 61988 AAGTTACCACTGGGTTCCAGGCAATTGACGTTGTTAGAACCGACAAAGTCCTGAGCAAGA 61929 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478 | |||||| || ||| || ||||| || || |||| |||||| | | ||| Sbjct 61928 CCAATAATCGTCTGCTGCAGGGAAGCTTCACCGTGTTGGTACGACGTCTGACCAGAAACG 61869 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536 || || |||| || | | ||||||||||| |||| || ||| |||||| || |||| Sbjct 61868 TAACCAGCCAACTCAACAACCTTCATGTCCTTGAC--CACGTTACTCTTGAAACAAGCAT 61811 Query 117537 AAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | || ||||||||||||| |||||||| |||||| Sbjct 61810 ACATGACCTTGCGCTGACCCGGCTTCAGTCCATCC 61776 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 152049 GGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTT 152108 ||| ||||| ||||| || || || | || || | ||| ||| || ||| || Sbjct 62022 GGCAGCATCTGAACCACCAGCAAGACGAGAACCGAAGTTACCACTGGGTTCCAGGCAATT 61963 Query 152109 GAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGC 152168 || |||||| | || || || | |||||| | | | |||||| |||||| || Sbjct 61962 GACGTTGTTAGAACCGACAAAGTCCTGAGCAAGACCAATAATCGTCTGCTGCAGGGAAGC 61903 Query 152169 TTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCAT 152228 ||||||||| || |||| |||||| | | | ||| || ||||||| | |||||||| Sbjct 61902 TTCACCGTGTTGGTACGACGTCTGACCAGAAACGTAACCAGCCAACTCAACAACCTTCAT 61843 Query 152229 GTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 |||| | || ||| |||||| ||| || || || ||||||||||| Sbjct 61842 GTCCTTGACCACGTTACTCTTGAAACAAGCATACATGACCTTGCGCTG 61795 >seq6529 Length=132804 Score = 91.5 bits (100), Expect = 2e-13 Identities = 388/604 (64%), Gaps = 18/604 (3%) Strand=Plus/Plus Query 74728 TCAGGTGAGAGTAAAGC-GTCACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATC 74786 ||||||||||| |||| | || |||||| ||| || || ||||| | || Sbjct 77285 TCAGGTGAGAGAAAAGAAGGCA-GGCAAAGTCCGTGTGAAGACCCTCATCACGAGAGATA 77343 Query 74787 AATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGAT---G 74843 | || || || || | || || ||||| | |||||||| || ||| ||||| | Sbjct 77344 AGCTCGTTGGAGAAAGTCAGACCGGGCATCATACCACGCTTGCGCAGCCAGAAGATAGAG 77403 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 ||| || | |||| ||||||||| || || ||| |||||||| || || || || Sbjct 77404 GCA---AAAGCACCAGAGAAGAAGATACCCTCAACAGCGGCAAAGGCAACCAGACGCTGG 77460 Query 74904 GCGAACGGTGCATC---GGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACC 74960 || || | | || | || ||||| || | ||||| || || || || || Sbjct 77461 GCAAAAGTCGACTCCTTGTCAGCAATCCACTTCAGGGCCCAGTCGGCCTTGCGGC-GAAT 77519 Query 74961 GCAGGGAC-AGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAG 75019 ||||||| ||| || || || | ||||||| || || | || ||||||| | Sbjct 77520 GCAGGGAATAGTGTCAATGGCGTTGAAGAGGTATGTGCGCTGAGCAGGCTCCTTGATGTA 77579 Query 75020 CTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGC 75079 ||||||||| | ||||| |||||||| || || ||| | | |||| | | Sbjct 77580 GGTGTCAATCAGCAAAGAGTAGGTCTCCGAGTGGATGTTCTCCATCATGATCTGGAAACC 77639 Query 75080 GTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTC 75139 |||||| | || || || | ||||| || || || ||| | | | | ||||| Sbjct 77640 GTAGAAGCAACGGGCTTCGGGGATCTGGACCTCAGCAGAGAAACGCTCGACCAAGTTCTC 77699 Query 75140 CATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTC 75199 |||| || ||||| || |||||||| || || || || ||| ||| |||| Sbjct 77700 GTTGACAATACCGTCAGAAGCGGCGAAGAAGGCAAGAACGTGAGAGATGAAGAACTGCTC 77759 Query 75200 ATC----GTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGA 75255 ||| |||| || | |||| ||| || | || ||| | | |||||||||||| Sbjct 77760 ATCCTTTGTCA-TGCGGTTGTTCCAGTCGTGAAGATCCTTGGAAAGGTCAATCTCCTCGG 77818 Query 75256 CCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGTCAGGGTAATTGATTG 75315 | ||||||||| | ||||| ||||||| ||| | || |||| ||||| | Sbjct 77819 CGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCAGATCTCGTGGTACTTGATAG 77878 Query 75316 GAAA 75319 | || Sbjct 77879 GGAA 77882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547171251411600