Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6498 297 2e-75 seq6394 194 2e-44 seq6283 145 9e-30 seq6490 131 2e-25 seq6519 82.4 9e-11 >seq6498 Length=96284 Score = 297 bits (328), Expect = 2e-75 Identities = 916/1402 (65%), Gaps = 40/1402 (3%) Strand=Plus/Plus Query 80374 CGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGA 80433 || ||| | || | ||| | |||||||||||| || ||||||||| || || |||||| Sbjct 27135 CGGCGCTGGTAAATGTTCGAAGTGTAAGGCTCGAAGCACTCGTTGTTACCCAGAATCTGA 27194 Query 80434 GCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTG 80493 | || ||| || ||||| || | | | ||| || || || | |||| || |||| Sbjct 27195 GAAGTTGACGCAGTGGGCATGGGCGCCAGAAGCAGCGAGTTGCGAACACCGTTCTGCTTG 27254 Query 80494 ATATCCTCGCGCAAATCTGACCAAAAATCAACCCCAA--CGCTG----TGAC--CCCACA 80545 || | ||| |||| |||| || || || | ||| |||| |||||| Sbjct 27255 ATCTGCTCCTTCAAAGAGTTCCAA---TC--CCACAGGTCACTGGGGGTGACATCCCACA 27309 Query 80546 TGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCT 80605 ||||| ||| | ||| |||| || | ||||| ||| || ||||| ||| | || | Sbjct 27310 TGTCGAACTGAAGGATACCCTGAGAAACAGGAGATCCCTCGTACGTCGAGTAAGTACCTT 27369 Query 80606 CCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGC 80665 | || | || ||||| || ||||| ||||| |||||| |||||||| Sbjct 27370 CAACAGCAGCGATATCGCACGAAGCCTCCAGGGCAGCGTGGTAAATGGTCTCAAAGATCT 27429 Query 80666 CCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGT 80725 |||||| | || |||| | || || | || | | || |||| | | Sbjct 27430 GCTTGTTGAGCTGACGAGCCTCGGCAGACTCAAAAGGCATACGAAGGGCCAGGAACGCAT 27489 Query 80726 CAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTC--GGC 80783 | ||||| |||||||| || | | || || ||||| ||| |||| | | || ||| Sbjct 27490 CGGCCAGACCCTGAACACCAACACCAATGGGACGGTGACGCATGTT--ACTGTTCCGGGC 27547 Query 80784 CTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCG 80843 ||| || ||||| ||| ||| |||| ||||||| |||||| ||||||| Sbjct 27548 CTCGACAACAGGGTAGTGGTTCACATCAATGATACGGTTCAAGTTGCGGACAACAACCTT 27607 Query 80844 TGTAACATCATGAAGTTTCTGAAAGTCGAAT---TGGTTCCCCT--TCA-CAAATGCCGG 80897 || ||||| || || ||||| |||||| | | ||| | ||| |||| || || Sbjct 27608 GGTGACATCGTGCAGCTTCTGGAAGTCGTAGCAGTTGTTGGTGTAGTCAACAAAGGCAGG 27667 Query 80898 AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGAT 80957 || || || |||| |||||||| || ||||| |||| | | |||||| || Sbjct 27668 GAGAGCAAGCGATGCCAAGTTGCACACAGCGACCTCATCAGGAGCGCAGTACTCGATAAT 27727 Query 80958 TTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTT 81017 || ||||| | || ||| ||| || |||||||| || ||||| |||| ||| Sbjct 27728 CTCAGTGCAAAGGTTGGAACTGCGAATAGTTCCCAGGTTCTTTTGGTTACTCTTGCGGTT 27787 Query 81018 GCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGC 81077 ||| |||||||| ||||| | ||| |||| ||||| ||| | | || ||||| Sbjct 27788 GCAGTGATCCTTGTACAACATGAAAGGGTTACCAGTCTCCGTCTGAGCTTCCAGAATGGC 27847 Query 81078 GTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGC 81137 | ||| | || | ||||||| ||| ||||| | | |||||| | Sbjct 27848 ATACCACAGCTTCTGAGCCTTGATGGTAAGACGGCCACGTCCTTCCTGCTCGTACTTGAC 27907 Query 81138 GTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCA 81197 |||| | ||||| | |||||| |||| | | | ||||||||||| ||||| Sbjct 27908 GTAAAGAGCCTCGAATTCCTCACCGTAGCAATCAGCCAAGCCAGGGCACTCGTTGGGGCA 27967 Query 81198 CATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAG 81257 ||| ||| ||| ||| || ||||| ||| ||||||||| |||||||||||| || Sbjct 27968 CATGAGGGTCCATTCGCCGTTCTTCTCAACACGCTTCATGAACAAGTCAGGGATCCACAG 28027 Query 81258 GGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCG 81315 ||| ||||| ||||| |||||| |||||| | ||| ||||| || | || Sbjct 28028 GGCAAGGAACAAATCGCG--AGCGCGAATCTCCTCCTTACCGTGGTTCTTCCGAAGGTCA 28085 Query 81316 AGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCC 81369 || || || | | || || ||||| |||||||| || | ||| | | || | | Sbjct 28086 AGGAACTCAAACACATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGCACCAGGACGC 28145 Query 81370 TTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGG 81429 ||| ||||||||| | ||||||||||||||| ||| || ||||||| |||||| Sbjct 28146 TTG---TTGCCACCCTGATCGACGTAACGGGCAGTGTTGTTGAACACACGCAGCATAGGA 28202 Query 81430 ATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCT 81487 | ||||| | || |||||| || || | || || || | || || || Sbjct 28203 ACAATACCGTTCGAGGTACCGTTAGTGCCGGCAATGTAGGAACCAGTAGCACGGATACGG 28262 Query 81488 TGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGG 81547 || ||| |||||||| ||||| | | ||| || ||| |||||| || | || Sbjct 28263 TGAACGTTG--AGACCGATACCACCCGCCATCTTGGAGATCATAGCACAGGTCTTGAGGG 28320 Query 81548 TCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCT 81607 | ||||| || || ||||| || || | |||||||| | |||||| ||| || | || Sbjct 28321 TATCATAGATACCTTCGATACTGTCCTCCTTCATGTCTACCAAGAAGCAGGAAGAAAGCT 28380 Query 81608 GAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTG 81667 |||| | ||||| ||||| || || || | |||||| |||| | | | | Sbjct 28381 GAGGCTGAGGGGTACCGGCGTTGAAGAGGGTAGGAGAGGCGTGAGTGAAGAACTTGCTCG 28440 Query 81668 ACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTA 81727 |||| |||| || |||||| || || || || ||||| ||||||| ||| | Sbjct 28441 ACATGAGGTTGTAAGTTTCCAGAACACGCTCAACATTATCACCCCAGATACCGACAGCAA 28500 Query 81728 CACGCATAAACATGTACTGGGG 81749 ||||||||| ||||| ||| || Sbjct 28501 CACGCATAATCATGTGCTGAGG 28522 >seq6394 Length=53086 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || |||||||| || ||||||||||||||||| | Sbjct 7240 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACCATCACTCTTGAGGTTGAGTCCTCT 7181 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || |||||||| |||||||| || ||||| |||||| Sbjct 7180 GACACCATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCGGACCAG 7121 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| |||||||| || ||||| | |||||||| | ||||| || Sbjct 7120 CAGCGTCTTATCTTTGCGGGTAAGCAGCTGGAGGACGGCCGTACCCTTTCCGACTACAAC 7061 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || ||| | || ||||| ||||| Sbjct 7060 ATCCAGAAGGAGTCTACTCTCCACCTCGTCCTCCGCCTTCGTGGTGG 7014 Score = 190 bits (210), Expect = 2e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||| ||||| ||||| |||||||| ||||| | Sbjct 6556 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATTACCCTTGAGGTCGAGTCTTCT 6497 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||| || || |||||||||||||| || ||||| |||||| Sbjct 6496 GATACCATTGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 6437 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||||||||| || ||||| | ||||||||| | ||||| || Sbjct 6436 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGTACCCTGTCTGACTACAAC 6377 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || || || || || | |||||||| ||||| || Sbjct 6376 ATCCAGAAGGAGTCTACCCTCCACCTGGTTCTCCGTCTTCGTGGTGGCCA 6327 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||| ||||| ||||| || ||||||||||| Sbjct 7012 ATGCAGATTTTCGTCAAGACCCTGACCGGAAAGACCATTACCCTCGAGGTTGAGTCCTCC 6953 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||| | || || |||||||||||||| || || || |||||| Sbjct 6952 GATACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 6893 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| ||||| ||||| |||||||||| || ||||| | || || || Sbjct 6892 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGATTACAAC 6833 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| || || ||| | || ||||| ||||| Sbjct 6832 ATCCAGAAGGAGTCCACTCTCCACCTCGTCCTCCGCCTTCGTGGTGG 6786 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || ||||| ||||| ||||| |||||||| ||||| Sbjct 6784 ATGCAGATTTTCGTCAAGACCCTGACCGGAAAGACAATTACCCTTGAGGTCGAGTCGTCG 6725 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||| | || ||||||||||||||||| ||||| || ||||| Sbjct 6724 GATACCATCGACAATGTTAAGTCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAA 6665 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| ||||||||||| || ||||||| ||||| || | ||||| || Sbjct 6664 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACTCTCTCGGACTACAAC 6605 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || ||||| || || | ||||| || ||||| Sbjct 6604 ATTCAGAAGGAGTCTACCCTTCACCTTGTTCTCCGTCTCCGTGGTGG 6558 Score = 163 bits (180), Expect = 3e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || ||||||||||| |||| ||||| ||| | ||| | Sbjct 7444 ACCGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGATACCATTGACAATGTCAAGTCC 7385 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| || || || ||||||||||| || ||||| ||||| ||| Sbjct 7384 AAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGCCTGATTTTCGCTGGCAAG 7325 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| ||| ||||| | || || || |||| ||||| |||||||| || Sbjct 7324 CAGCTTGAGGATGGTCGCACCCTCTCCGATTACAACATCCAGAAGGAGTCCACTCTCCAC 7265 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || ||||| ||||| Sbjct 7264 CTCGTCCTCCGCCTTCGTGGTGG 7242 >seq6283 Length=33863 Score = 145 bits (160), Expect = 9e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| || || || ||||| || || || ||||| ||||| || | ||| Sbjct 31068 TTCGTCAAGACCCTGACGGGTAAGACCATCACCCTGGAGGTCGAGTCTTCGGACACCATC 31127 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | || | ||| | || || |||||||||||||| ||||| || ||||| ||||| || Sbjct 31128 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCCCCGGACCAACAGCGCCTG 31187 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||| ||||| || ||||||| || ||||| | ||||| || |||| ||| Sbjct 31188 ATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCGGACTACAACATCCAGAAG 31247 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||||||| || || ||| | ||||| || ||||| Sbjct 31248 GAGTCCACTCTCCACCTGGTCCTCCGTCTCCGTGGTGG 31285 >seq6490 Length=90610 Score = 131 bits (144), Expect = 2e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| ||||| || ||||| || || |||||||| ||||| Sbjct 85095 ATGCAGATTTTCGTTAAGACCCTTACGGGTAAGACGATCACCCTTGAGGTCGAGTCCTCG 85154 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || |||||||||||||| ||||| || |||||| Sbjct 85155 GACACGATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 85214 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || ||||| ||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 85215 CAGCGCCTGATTTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCTGACTACAAC 85274 Query 27586 GTCCAAAAGG 27595 |||| |||| Sbjct 85275 ATCCAGAAGG 85284 >seq6519 Length=116256 Score = 82.4 bits (90), Expect = 9e-11 Identities = 168/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 31983 GGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCT-GT 32041 ||| || || ||||| ||||||||||| || || || || |||||| ||| | || Sbjct 61776 GGATGGACTGAAGCCGGGTCAGCGCAAGGTCATGTATGCTTGTTTCAAGAGTAACGTGGT 61835 Query 32042 CGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACC 32101 | || ||||||||||| | || || | || ||||| | | || ||| | || || | Sbjct 61836 CAAG-GACATGAAGGTTGTTGAGTTGGCTGGTTACGTTTCTGGTCAGACGTCGTACCAAC 61894 Query 32102 ACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAA 32161 |||| || || || || ||| || ||| | ||||||||| ||||||||||| | | Sbjct 61895 ACGGTGAAGCTTCCCTGCAGCAGACGATTATTGGTCTTGCTCAGGACTTTGTCGGTTCTA 61954 Query 32162 ATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGG 32221 | ||| | || | || || || ||| | || || | || || || ||||| | Sbjct 61955 ACAACGTCAATTGCCTGGAACCCAGTGGTAACTTCGGTTCTCGTCTTGCTGGTGGTTCAG 62014 Query 32222 ATGCTGC 32228 ||||||| Sbjct 62015 ATGCTGC 62021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570263762867040