Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6394 95.1 8e-15 seq6490 86.0 4e-12 seq6283 84.2 1e-11 >seq6394 Length=53086 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | |||| ||||| || |||||| || ||||| || || || Sbjct 6329 GCCACCACGAAGACGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGA 6388 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || ||||| ||||| || | |||||| |||||||| || Sbjct 6389 CAGGGTACGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGAGG 6448 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | ||| || || ||| | Sbjct 6449 GATGCCCTCCTTGTCCTGGATC-TTGCTCTTGACGTTGTCAATGGTATCAGAAGACTCGA 6507 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || ||||| | || ||||| || |||||||| Sbjct 6508 CCTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 6556 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||||||| |||||| || ||||| ||||| ||||| || || | || || || || Sbjct 6810 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCGAGCTGC 6869 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || || | ||||| |||||||| || | ||||||||||| |||| || Sbjct 6870 TTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATC-TT 6928 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || || | ||| || || | ||| || || | ||| || || || ||||| Sbjct 6929 GGACTTGACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTAATGGTCTTTCCGGT 6988 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || ||||||||||| Sbjct 6989 CAGGGTCTTGACGAAAATCTGCAT 7012 >seq6490 Length=90610 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTG-CTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTT 34561 |||| ||||| || |||| || ||||| || || ||||| || || | || || || | Sbjct 85299 ATGGGGAGTGACTAACCTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCT 85240 Query 34562 GTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCT 34621 | || || || || || | ||||| |||||||| || | ||||||||||| |||| Sbjct 85239 GCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATC- 85181 Query 34622 TTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCG 34680 || | || ||| | || ||||| | ||| || || | ||| ||||| ||||| Sbjct 85180 TTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTGATCGTCTTACCC 85121 Query 34681 GTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || | || || || ||||||||||| |||| Sbjct 85120 GTAAGGGTCTTAACGAAAATCTGCATCTTGA 85090 >seq6283 Length=33863 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||||||||| |||||| || ||||| || || || || || || Sbjct 31276 AGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 31217 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| || || || || || || | |||||||||||||| || | |||||| Sbjct 31216 CCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCC 31157 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 31156 TTGTCCTGGATCTT 31143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314704506412286