Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6394 118 9e-22 >seq6394 Length=53086 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||||||||| ||| | ||||| ||||| || || | || Sbjct 6556 ATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATTACCCTTGAGGTCGAGTCTTCT 6497 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || || || ||||| || ||||| || || || || Sbjct 6496 GATACCATTGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 6437 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || |||| ||| || ||| | || || |||||| Sbjct 6436 CAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAGGACGGTCGTACCCTGTCTGACTACAAC 6377 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| ||| | || ||||| | ||| | || |||||| Sbjct 6376 ATCCAGAAGGAGTCTACCCTCCACCTGGTTCTCCGTCTTCGTGGTGGC 6329 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||| ||| | ||||| || || || || | ||| Sbjct 7012 ATGCAGATTTTCGTCAAGACCCTGACCGGAAAGACCATTACCCTCGAGGTTGAGTCCTCC 6953 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || || || ||||| || || || || || || || Sbjct 6952 GATACCATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 6893 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | || || | ||| |||||||||||||| Sbjct 6892 CAGCGCCTGATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGATTACAAC 6833 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 6832 ATCCAGAAGGAGTCCAC 6816 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||| ||| | ||||| ||||| || || |||| Sbjct 6784 ATGCAGATTTTCGTCAAGACCCTGACCGGAAAGACAATTACCCTTGAGGTCGAGTCGTCG 6725 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||| ||||| || || || || || || ||| Sbjct 6724 GATACCATCGACAATGTTAAGTCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAA 6665 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| || || || | || || | || | || || |||||| Sbjct 6664 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGATGGCCGTACTCTCTCGGACTACAAC 6605 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | || | ||| | ||| | || ||||| || Sbjct 6604 ATTCAGAAGGAGTCTACCCTTCACCTTGTTCTCCGTCTCCGTGGTGGTAT 6555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434882834547840