Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6283 150 4e-31 seq6394 141 2e-28 seq6490 105 2e-17 >seq6283 Length=33863 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||||||||| || || |||| ||||| || | || || | ||||| Sbjct 31270 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCATCC 31211 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || |||||||| || |||||||| |||||||| Sbjct 31210 TCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTCCTTGTCC 31151 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | || || || | ||||| ||| Sbjct 31150 TGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTC 31091 Query 225682 TTGCCCGTCAAAGTTTTTATGAA 225704 || ||||||| || || | ||| Sbjct 31090 TTACCCGTCAGGGTCTTGACGAA 31068 >seq6394 Length=53086 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| |||||||||||||| || || |||| |||||||||| | || Sbjct 7247 ACGAAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGT 7306 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| |||||||| || || || || ||||| || || ||||| Sbjct 7307 GCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACC 7366 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| || ||||| || |||| || || || | Sbjct 7367 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAACCTCGAG 7426 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 7427 GGTGATGGTCTTGCCGGT 7444 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| |||||||||||||| || || |||| |||||||||| | || Sbjct 6791 ACGAAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGT 6850 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| |||||||| || || || || ||||| || || ||||| Sbjct 6851 GCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACC 6910 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| || ||||| || |||| || || || | Sbjct 6911 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAACCTCGAG 6970 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || |||| || || | ||| | ||||| Sbjct 6971 GGTAATGGTCTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 7012 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| ||||||||||| || || || |||| ||||| |||| | || Sbjct 7019 ACGAAGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGT 7078 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || || |||||||| || || ||||| || || ||||| Sbjct 7079 ACGGCCGTCCTCCAGCTGCTTACCCGCAAAGATAAGACGCTGCTGGTCCGGAGGGATACC 7138 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || || ||||| ||| || ||||||||||| |||| || || || | Sbjct 7139 CTCCTTATCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCAAG 7198 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| |||| ||| || Sbjct 7199 AGTGATGGTCTTGCCAGTCAGAGTCTT 7225 >seq6490 Length=90610 Score = 105 bits (116), Expect = 2e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| || |||||||| |||||||| || || || || ||||| || ||||| || ||| Sbjct 85252 CCATCCTCCAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCC 85193 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| ||| || ||||| ||||| |||| || || || | ||| Sbjct 85192 TTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCAAGGGTG 85133 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||||||| ||||| | || || | ||| | ||||| || Sbjct 85132 ATCGTCTTACCCGTAAGGGTCTTAACGAAAATCTGCATCTT 85092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192431242780148