Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq6394 127 5e-24 seq6283 95.1 3e-14 >seq6394 Length=53086 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || ||||||||||| || ||||||||||| |||| | || | || || Sbjct 7028 GAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCGTC 7087 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || |||||||| | ||||||||||| | ||| || ||||| || Sbjct 7088 CTCCAGCTGCTTACCCGCAAAGATAAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATC 7147 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || ||||| | || | | |||| || ||| || |||||||| || || Sbjct 7148 CTGAATCTTCGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCAAGAGTGATGGT 7207 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || |||||||| || |||| |||||| Sbjct 7208 CTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 7240 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || |||||||| || ||||||||||| || | | || | || || Sbjct 6344 GAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCGTC 6403 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || |||||||| | ||||||||||| | ||| || ||||| || Sbjct 6404 CTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTC 6463 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | | || ||| ||| || ||||| ||||| || Sbjct 6464 CTGGATCTTGCTCTTGACGTTGTCAATGGTATCAGAAGACTCGACCTCAAGGGTAATGGT 6523 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||||||||||| |||||| Sbjct 6524 CTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 6556 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || ||||| ||||| || |||||||||||||||| | || | ||||| Sbjct 6800 GAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATC 6859 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || ||||| || || | ||||||||||| | ||| || ||||| || Sbjct 6860 CTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 6919 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || |||||| | || | | | || || ||| || || || ||||| || Sbjct 6920 CTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTAATGGT 6979 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||| | |||||| Sbjct 6980 CTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 7012 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || ||||| ||||| || |||||||||||||||| | || | ||||| Sbjct 7256 GAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGAGAGGGTGCGACCATC 7315 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || ||||| || || | ||||||||||| | ||| || ||||| || Sbjct 7316 CTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTC 7375 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || |||||| | || | | | || || ||| || || || || || || Sbjct 7376 CTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAACCTCGAGGGTGATGGT 7435 Query 152072 TTTGCCCGTGA 152082 ||||| |||| Sbjct 7436 CTTGCCGGTGA 7446 >seq6283 Length=33863 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || ||||| ||||| || ||||||||||| || | | || | Sbjct 31277 GAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCG 31218 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || |||||||| || | ||| ||||||| | || || || Sbjct 31217 GCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATACCCTC 31158 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| ||| ||| || || || || Sbjct 31157 CTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCCAGGGT 31098 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 || || || ||||| || ||||| ||||| Sbjct 31097 GATGGTCTTACCCGTCAGGGTCTTGACGAA 31068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153724087461682