Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Huntiella_20omanensis_20[genbank_20GCA_5F000833645.1_202015-02-09] 6,542 sequences; 31,125,221 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq6283 183 6e-41 seq6490 174 3e-38 seq6394 154 3e-32 seq6529 136 8e-27 seq6519 96.9 7e-15 seq6507 86.0 1e-11 >seq6283 Length=33863 Score = 183 bits (202), Expect = 6e-41 Identities = 172/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || ||||| || | ||| || || |||||||||||||| | Sbjct 31286 ACCACCACGGAGACGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 31227 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||||| || |||||||| || Sbjct 31226 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATCAGGCGCTGTTGGTCCGGGGG 31167 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| |||||||| | || ||| | ||||| |||||||||| ||||| Sbjct 31166 AATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 31107 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || || ||||| ||||||||||||| ||||| ||||| Sbjct 31106 CTCCAGGGTGATGGTCTTACCCGTCAGGGTCTTGACGAA 31068 >seq6490 Length=90610 Score = 174 bits (192), Expect = 3e-38 Identities = 153/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||||| ||| |||||||||||||| || || || || || || ||| Sbjct 85282 TTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAAATC 85223 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || || ||||| ||||| ||||||||||| |||||||| | || ||| | ||| Sbjct 85222 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCG 85163 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 || |||||||| | ||||| || || ||||||||||||||||| | ||||||||||| Sbjct 85162 ATCGTGTCCGAGGACTCGACCTCAAGGGTGATCGTCTTACCCGTAAGGGTCTTAACGAAA 85103 Query 283092 ATCTGCATTTT 283102 |||||||| || Sbjct 85102 ATCTGCATCTT 85092 >seq6394 Length=53086 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || || || |||||||||||||| | Sbjct 7013 ACCACCACGAAGGCGGAGGACGAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 7072 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || || || || |||||||| | ||| || ||||| || Sbjct 7073 AAGGGTACGGCCGTCCTCCAGCTGCTTACCCGCAAAGATAAGACGCTGCTGGTCCGGAGG 7132 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || || ||||| | || ||| | ||||| ||||| || | || || Sbjct 7133 GATACCCTCCTTATCCTGAATCTTCGACTTGACGTTGTCGATGGTGTCAGAGGACTCAAC 7192 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || |||| |||||| || || |||||||| Sbjct 7193 CTCAAGAGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 7240 Score = 147 bits (162), Expect = 5e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || ||||| || | || || || |||||||||||||||| Sbjct 6330 CCACCACGAAGACGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGAC 6389 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || ||||| || || || || |||||||| | ||| || ||||| || Sbjct 6390 AGGGTACGACCGTCCTCCAGCTGCTTACCAGCAAAGATAAGACGCTGCTGGTCCGGAGGG 6449 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||| ||||| || ||| | || || || || |||| ||||| Sbjct 6450 ATGCCCTCCTTGTCCTGGATC-TTGCTCTTGACGTTGTCAATGGTATCAGAAGACTCGAC 6508 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || |||| |||||| ||||| |||||||| Sbjct 6509 CTCAAGGGTAATGGTCTTTCCGGTCAGAGTCTTCACGAAGATCTGCAT 6556 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || ||||||||||| || | Sbjct 6785 ACCACCACGAAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGA 6844 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||||||||| || || || || || || |||| || || ||||| || Sbjct 6845 AAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGG 6904 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || || | || || || || || | || || Sbjct 6905 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAAC 6964 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||| || |||| ||||| ||||| |||||||| Sbjct 6965 CTCGAGGGTAATGGTCTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 7012 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | || || || || ||||||||||| | Sbjct 6557 ACCACCACGGAGACGGAGAACAAGGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCCGA 6616 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || || || |||| || |||||||| || Sbjct 6617 GAGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGTTGGTCCGGGGG 6676 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||| || ||||| | || || | ||||| || ||||| | ||||| Sbjct 6677 AATACCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCGATGGTATCCGACGACTCGAC 6736 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || || ||||| || |||| ||||| ||||| |||||||| Sbjct 6737 CTCAAGGGTAATTGTCTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 6784 Score = 116 bits (128), Expect = 8e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || ||||||||||| || | Sbjct 7241 ACCACCACGAAGGCGGAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGA 7300 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || || || || |||| || || ||||| || Sbjct 7301 GAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCCGGGGG 7360 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || || | || || || || || | || || Sbjct 7361 GATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCAATGGTATCGGAGGACTCAAC 7420 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||| ||||| || || Sbjct 7421 CTCGAGGGTGATGGTCTTGCCGGT 7444 >seq6529 Length=132804 Score = 136 bits (150), Expect = 8e-27 Identities = 179/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 ||| |||| || | || | | ||| ||||||||| || ||| ||| |||| ||| | Sbjct 77252 ATCATCACTGATGCCGTCGTCATTGAGAAGGAGTTCCTTACCGAGGCTCTTCCCTGCGCT 77193 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 ||| |||| ||||| ||||| |||||| | |||||||| ||||| || || ||| || Sbjct 77192 CTTCTCGGTATGAACGCTGACCTCATGAAGACCTATATCGAGTTCGTCGCCGACCGTCTT 77133 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 | || || || || |||| || ||||| || || |||||||||| ||||||||| Sbjct 77132 CTGGTCGCTCTCGGTAACGACAAGGTGTACAAGGCCTCCAACCCCTTCGACTTTATGGAG 77073 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402 ||| || || || || || ||||||||||| |||||||| | ||||| || | | Sbjct 77072 AACATCTCCCTTGGTGGAAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTACCAGAAG 77013 Query 230403 CCCGGTGT 230410 | ||||| Sbjct 77012 GCTGGTGT 77005 >seq6519 Length=116256 Score = 96.9 bits (106), Expect = 7e-15 Identities = 198/289 (69%), Gaps = 8/289 (3%) Strand=Plus/Minus Query 274431 ACGATGGGCGTGATAAATTTCTTCAGGAAACCTGGAATTTCTAGCAGACTGGGGAAACAA 274490 |||| || || || |||| || | ||| || ||||| | ||||| ||||| | Sbjct 61367 ACGACAGGAGTAATGAATTCTTTGAAGAACCCGGGAATCTTGAGCAGTGAAGGGAACTGA 61308 Query 274491 CTATGGAAAAAGTTCATGACAAGACC--TGATATGTGAGTTCCGTCAACGTCGGCATCTG 274548 || || ||||| || | |||||| ||||||| || || || || ||| | Sbjct 61307 ACCTGCAAGAAGTTGATCAAAAGACCCTTGATATGCGAA--CCATCGTGATCCTGATCGG 61250 Query 274549 TCATGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTTATACAACTTCCCTGT-- 274606 ||||||||| | ||| ||||| ||||| | |||||| |||| |||| | ||| Sbjct 61249 CCATGATCATCAGATGACCATAACGAAGTGTCTTGGTATCTGTATA-AACTGTCTTGTGC 61191 Query 274607 TTGAAGCCCAAGAATTTGCTTGAGAGCGGTGATTTCTTCGTTCTTTGTGATACTCGCCAC 274666 |||| |||||||| | | |||| | ||||||| |||||| || || ||| Sbjct 61190 TTGAGACCCAAGAACT-GTTTGATATTTTGAATTTCTTGGTTCTTGGTAATTTGGTCCAA 61132 Query 274667 AGAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCA 274715 |||||||||||| || |||| || |||||| || || |||||||| ||| Sbjct 61131 AGAAGCATCACGGACATTCAACATCTTACCACGAAGTGGGAAAACACCA 61083 >seq6507 Length=104257 Score = 86.0 bits (94), Expect = 1e-11 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 315651 GTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAG 315710 |||| |||| | | || ||||| ||||| |||||| |||| | || ||||||||| Sbjct 24860 GTGAGTAATGATAATGACACCACCCTCGAAAGACTTAAGAGCCTTAGACAGGGCACCGAG 24919 Query 315711 ACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCA 315770 | || || || | | ||||||| ||||||||||||||||| | ||| || | ||||| Sbjct 24920 AGAGTCACGATCAAGATAGTTGGTAGGCTCATCAAGAACGATCAAGTGAGGACGCTGCCA 24979 Query 315771 TAGAGC-GGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAG 315829 |||| |||| | | |||| ||| | || ||||| ||||| || ||||| | Sbjct 24980 -CGAGCAGGCGGCAAGGACGACCTTGACACGCTGACCACCGGACAGACCCTTCATGCGGG 25038 Query 315830 AATGAG 315835 | |||| Sbjct 25039 AGTGAG 25044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046651462974468